RNA id: AMCG00019299


Basic Information

Item Value
RNA id AMCG00019299
length 2220
RNA type mRNA
GC content 0.47
exon number 20
gene id AMCG00019299
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 12978299 ~ 12985783 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGATAGTGAAAACAGGAACTAGTCAGGAGAGTACGGAAGCTTTAGCAACAAACAATATTGAGGACTGCAAACCCAATTTCAACATGATTGAAGAGCATTACCTCGAACTGTGCGATAACCCGGTCCAGTTTGAAAATGCTTCTGCTGTTAACAATGTCTTTTTTGacgaagcaaacaaacaaGTGTTTGCAGTGCGATCAGGTGGTGCTACGGGGGTTGTGGTGAAAGGACCGGATGATAAAAGCACCGTTGCTTTCAGGATGGATGATAAAGGAGAAGTGAAATGCATCAAGTTTTCTTTGGGTAACAAGATCTTAGCAGTCCAGAGAACCTCAAAATCTGTGgaGTTCATCAACTTCATGCCTGATTTACCTCACTTGGAATATTCCCAGGAATGCAGgacCAAGAATGCCAGTGTCCTGGGTTTCTGCTGGACCAACTGGAATGAGATTGTGTTCATTACAGACCAGGGGATTGAATTCTATCagGTGTTACCTGACAAGCGCAGTTTGAAGCTGCTGAAGAGTCAGAGCATTAATGTGAATTGGTACATGTACTGCCCGGAGACCTTTGTCATCCTGCTGTCCACCACCGTGCAGGGCAATGTGCTCCAGCCATTCGTCTTCAGGagtggAACAATGTCCAAAATGTCCAAGTTTGAAATTGAGTTGCCAATAGTCCCTAAACCAGCCAAACTCAACCTGTCGGAGAGAGACATTGCAGTGGCCACCATATATGGGCAGCTGTATGTGATGTACCTGAAACACCACTCCAGGACAGTGAACAGCCCAGGTGCAGAGGTTGTGCTTTATCACCTGCCAAGGGAAGGGGCCTGTAAAAAGGCTAATGTGCTGAAGCTGAACACTACAGGGAAGTTTGCTCTGAACGTGGTGGATAATTTAGTGGTGGTGCATCATCAGAGCTCACAGACGTCCATAATATTTGACATTAAGCTGAAGGAAGCAGACAGTGCCATGAACGTTCACCAGCCAGTCCTGCCTGCTCGCTCCATCCATCCCTACAAGATCCCACTGACAGGCCCCGCAGCTGTAGCCACACAGATGCCAGTACCGTGTGAACTCTACTCTTCCACTTGGAGTGTCTTTCAACCAGACATTATCATCAGTGCAAGCGAAGGGTACCTGTGGTACCTACAGGTGAAGCTGCAGCCGGCAGTCAACCTCCTGCAGGATAAAGGAAAGCTAATGGACTTTCTGTTGAGGAGAAGGGACTGCAAGATGGTGATCCTCTCCGTTTGTTCCCAGATGCTGATTGGAGGAGAGAAGGGCAGCCTGCCTGTCATCGCCACTGTCTTTGACAAACTGAATCAGGTGTACAAAGAATACCTGGAGGCAGAACAGAGTTACACCATGGCTGTGGAGTCTGGTCAGAGTCGAGGGAACACAGCGCAGAAGAGGCCGGTCCGCACCCAGGCTGTGATTGACCAGTCGGACATGTACACACACGTGCTGTCTGTGTTTACAGAGAAGAAGGACACGTCGCACAAGTTCATCATCGCGGTGCTGATGGAATATATTCGATCTCTCAACCAGTTCCAGATTACAGTTCAGCATTACCTCTATGAGCTGGTCATAAAGACCCTGGTCCAGCACAACCTCTTCTACATGCTCCACCAGTTCTTGCAGTACCACGTGCTCAGTGACTCCAAGCCACTGGCCTGTCTCCTGCTGTCTCTCGAAAGCACCTACCCACCTGCCCACCAGCTTTCCTTGGACATGCTGAAGAGATTGTCCACGGCCAATGATGAGATCGTGGAGGTGCTGCTTTCCAAACACCAGGTCCTGGGAGCTCTGCGCTTCATCAGGAGTGTCGGTGGACACGACAACATCTCTGCGCGCAAGTTCTTAGACGCAGCCCGGCAAACTGAGGACGAGATGCTTTTCTACACCATTTTCAGGTTCTTTGAGCAAAGGAATCAGAGATTACGTGGAAATCCCAATTTTACACCAgGAGAACACTGTGAAGAACACGTGGCTTATTTTAAGCAAGTTTTCGGGGAACAAGCACTAATGAAGCTCACATCTTTATGAACCAATGCTGCTTGAATCCCTTGCGCTTTTCCAGTATAACCTGTATACTTAATTTACTGTATGTCAAagttgttttacaaaaagcattGATACTTAataaagctctctctctctctctaatacatatatatatatatatatatatatatatatatacacacacacaca

Function

GO: NA

KEGG:

id description
K24763 RMC1; regulator of MON1-CCZ1 complex

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU41212 lncRNA upstream 364373 12613285 ~ 12613926 (+) True G32893
TU41211 lncRNA upstream 365766 12609401 ~ 12612533 (+) True G32892
TU41061 lncRNA upstream 977135 12000963 ~ 12001164 (+) True G32778
TU40936 lncRNA upstream 1340419 11632358 ~ 11637880 (+) True G32674
TU41445 lncRNA downstream 325631 13311414 ~ 13311742 (+) True G33075
TU41465 lncRNA downstream 647919 13633702 ~ 13638171 (+) True G33093
TU41531 lncRNA downstream 1167019 14152802 ~ 14160703 (+) True G33141
TU41546 lncRNA downstream 1299782 14285565 ~ 14286016 (+) True G33153
TU41557 lncRNA downstream 1506109 14491892 ~ 14492206 (+) True G33161
AMCG00019294 mRNA upstream 987 12970975 ~ 12977312 (+) True AMCG00019294
AMCG00019298 mRNA upstream 49965 12926782 ~ 12928334 (+) True AMCG00019298
AMCG00019296 mRNA upstream 61583 12905474 ~ 12916716 (+) True AMCG00019296
AMCG00019300 mRNA upstream 95773 12881981 ~ 12882526 (+) True AMCG00019300
AMCG00019297 mRNA upstream 105245 12858980 ~ 12873054 (+) True AMCG00019297
AMCG00019305 mRNA downstream 21326 13007109 ~ 13030766 (+) True AMCG00019305
AMCG00019304 mRNA downstream 45869 13031652 ~ 13112713 (+) True AMCG00019304
AMCG00019307 mRNA downstream 155828 13141611 ~ 13149184 (+) True AMCG00019307
AMCG00019308 mRNA downstream 168037 13153820 ~ 13162062 (+) True AMCG00019308
AMCG00019309 mRNA downstream 229173 13214956 ~ 13236826 (+) True AMCG00019309
TU40734 other upstream 2568802 10404639 ~ 10409497 (+) True G32539
TU40438 other upstream 3349637 9369898 ~ 9628662 (+) True G32293
TU40426 other upstream 3439088 9261374 ~ 9539211 (+) True G32286
TU40432 other upstream 3629480 9329479 ~ 9348819 (+) True AMCG00019215
TU40199 other upstream 4593707 8345455 ~ 8384592 (+) True G32130
TU41554 other downstream 1453470 14439253 ~ 14486706 (+) True G33159
TU41707 other downstream 2178565 15164348 ~ 15169841 (+) True G33283
TU41862 other downstream 3058159 16043942 ~ 16081943 (+) True G33406
TU42780 other downstream 7621691 20607474 ~ 20610889 (+) False G34170
TU42783 other downstream 7621691 20607474 ~ 20610889 (+) True G34170

Expression Profile