RNA id: AMCG00019300



Basic Information


Item Value
RNA id AMCG00019300
length 546
RNA type mRNA
GC content 0.67
exon number 1
gene id AMCG00019300
representative True

Chromosome Information


Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 12881981 ~ 12882526 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGGCGGCCGCCACCAGCTCCAGCGCGGCCACCCTGCAGATCAAGCCCCCCAGCATCGAGAGGAAGCGCATCGACCCGCGGCGCAGACAAGCGGCGCTCTCCTTCCTCAGCAACATCTCCCTGGACGGCCGGCCGGTGCAGGATGACGGCGACAACTCCGACGGGGCAGTTGAAGCCCGGACTAGACCGAGCCTGGTTTCTGCAGAGAGGGCGATGTATCCGGCGGCGGCGGCCCAGGCGCTCGCTGCTGCGAACCAGGCTCTGCTGTACAGTAACGCCCGCAGCAGTTTCGGGCTGAGCTCGGTGGCAGCCCCGCTGTGCGCCGACGCGGAAAACGATGGCTTCGGCTGCGGGGTGCACGCCGGGCAGCCCGCTTTCAGCTCCCCGTACCCCGCAGTGTCCGCGGCGGCTGCCAGGGGGAGGCTGCAGACTTTCACTCAGGGAATCCTACCTGCCACCTTTGCCAGGCAGCAGCCTCAAAATTACTGCTGCATGGACGCGGGGCAGATCGGCAGCACTGCCTTTGAGCTGCAGAGATCCAGGTAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU41212 lncRNA upstream 268055 12613285 ~ 12613926 (+) True G32893
TU41211 lncRNA upstream 269448 12609401 ~ 12612533 (+) True G32892
TU41061 lncRNA upstream 880817 12000963 ~ 12001164 (+) True G32778
TU40936 lncRNA upstream 1244101 11632358 ~ 11637880 (+) True G32674
TU41445 lncRNA downstream 428888 13311414 ~ 13311742 (+) True G33075
TU41465 lncRNA downstream 751176 13633702 ~ 13638171 (+) True G33093
TU41531 lncRNA downstream 1270276 14152802 ~ 14160703 (+) True G33141
TU41546 lncRNA downstream 1403039 14285565 ~ 14286016 (+) True G33153
TU41557 lncRNA downstream 1609366 14491892 ~ 14492206 (+) True G33161
AMCG00019297 mRNA upstream 8927 12858980 ~ 12873054 (+) True AMCG00019297
AMCG00019295 mRNA upstream 103366 12767954 ~ 12778615 (+) True AMCG00019295
AMCG00019293 mRNA upstream 159771 12708565 ~ 12722210 (+) True AMCG00019293
AMCG00019289 mRNA upstream 210952 12641964 ~ 12671029 (+) True AMCG00019289
AMCG00019290 mRNA upstream 283464 12572727 ~ 12598517 (+) True AMCG00019290
AMCG00019296 mRNA downstream 22948 12905474 ~ 12916716 (+) True AMCG00019296
AMCG00019298 mRNA downstream 44256 12926782 ~ 12928334 (+) True AMCG00019298
AMCG00019294 mRNA downstream 88449 12970975 ~ 12977312 (+) True AMCG00019294
AMCG00019299 mRNA downstream 95773 12978299 ~ 12985783 (+) True AMCG00019299
AMCG00019305 mRNA downstream 124583 13007109 ~ 13030766 (+) True AMCG00019305
TU40734 other upstream 2472484 10404639 ~ 10409497 (+) True G32539
TU40438 other upstream 3253319 9369898 ~ 9628662 (+) True G32293
TU40426 other upstream 3342770 9261374 ~ 9539211 (+) True G32286
TU40432 other upstream 3533162 9329479 ~ 9348819 (+) True AMCG00019215
TU40199 other upstream 4497389 8345455 ~ 8384592 (+) True G32130
TU41554 other downstream 1556727 14439253 ~ 14486706 (+) True G33159
TU41707 other downstream 2281822 15164348 ~ 15169841 (+) True G33283
TU41862 other downstream 3161416 16043942 ~ 16081943 (+) True G33406
TU42780 other downstream 7724948 20607474 ~ 20610889 (+) False G34170
TU42783 other downstream 7724948 20607474 ~ 20610889 (+) True G34170

Expression Profile