RNA id: AMCG00019301


Basic Information

Item Value
RNA id AMCG00019301
length 1550
RNA type mRNA
GC content 0.47
exon number 10
gene id AMCG00019301
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 13008762 ~ 13018024 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tgtgtgagagagagagagagagagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggagcacTGCagtgcctgcctgcctgcatgGCTCCGGATCCCACGACACTGACAGCACTCCAGCAAGATCCGAAAACACGGCGTGTGAGCGGGGCTGCAGGGCAGGGAGTACCGTGGCCATCGAGACAGGACACTGAGATGCGTCTCTCATGAGTCTTGCAGCATGTCTTTCAAGAAGGAAACACCTCTTGCCAACGCTGTATTTTGGGCAGCAAGGAAGGGGAACTTGGCTCTCCTGCAGTTACTATTAAATAGTGGCCGAGTAGATGTGGACTGCAAAGACAGTTTTGGAACCACGGCTCTGATGGTAGCATCCTACAGTGGACACTACGAGTGTGTCAGAGAGCTGATCATGCAAGGCGCAGACATCAACCTGCAGAGAGAGaCAGGCTCCACTCCCCTTTTCTTCGCTGCGCAGCAGGGGCACAGTGACATCGTGAAGCTGCTGTTTGAGTTCGGAGCCTCCACTGAATTTCAGACAAAGgATGGTGGTACAGCCTTATCAGCAGCCTGTCAATATGGTCACTCTAAAGTGGTGGAGACCCTGTTGAAATATGGTGCTAATGTCCATGACCAGCTGCACGACGGTGCCACACCGCTCTTCCTTGCTGCCCAGGAAGGACATGTTACTGTAATACGACAACTTCTGTCTTCAGGAGCCAAAGTCAACCAACCGCGAGATGGGCCAGTACAGTGCTCAAGCTCAGGAGCTACCCTTGTCTTCCAGGATGGTACGGCTCCACTCTGGATGGCCGCTCAGATGGGACACAGTGAGGTAGTGAAGGTCCTGTTACTCCGAGGAGCTGATCGAGATGCTGACAGAAAAGATGGGTCTACAGCTTTATTTAAGGCTTCTCACAAAGGGCATAATGATGTCATTGAAGAACTTCTTAAATTTTCCCCTTCCCTCAGCCTTCTTAAGAATGGATCAACAGCCCTCCATGCAGCAGTGTTGGGAGGAAATGTTAGATCAGTGGTGCTATTACTTGGAGCTAATGCGGACCCTACACTAAGAAATACGAATAACGAATTACCTGCCGACCTTACAAAAAATGAACGCATTCTGAGAGTATTACGGACAAAACTATCCAATAGAACTAGTTGATGACTCTCGATGGTTTATACCAATGGCTGTGGAGTCCAAGAAGAGCACTTAGGTCCTGTCAAAGAAGGTCTCTGAGGGACACAGCGTCATTCCTGGCGACACCAATGAGATTCCAGTTCTTGCTTCCAGTTACAGCTTAAGAGAGCGTGCATTAATGAATAGCCATAATGTAAAATCAGGAAAGTGATTTACAAGTCtgatatgaaatgaaaatcatCAGCTTTGTACAAGTCGAGATTTCTGTATATCTCCTTTGTTCGAAGGTTGATGCAATCTATGCTAAATATTTTTctcagaactttttttttctctctcctggtgctgtatatttcttaatattttgcGAGTTTAAttgctgtgtttgtaataaataaactggaTGTTTGTGGAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU41149 lncRNA downstream 555135 12452597 ~ 12453627 (-) True G32844
TU41125 lncRNA downstream 590943 12414106 ~ 12417819 (-) False AMCG00019284
TU41123 lncRNA downstream 641536 12366786 ~ 12367226 (-) True G32825
TU41072 lncRNA downstream 941710 12062278 ~ 12067052 (-) True G32786
TU41067 lncRNA downstream 948511 12059624 ~ 12060251 (-) True G32784
TU41374 lncRNA upstream 85929 13103953 ~ 13106250 (-) True G33030
TU41434 lncRNA upstream 150412 13168436 ~ 13171846 (-) False AMCG00019312
TU41440 lncRNA upstream 237339 13255363 ~ 13257313 (-) True G33070
TU41446 lncRNA upstream 293479 13311503 ~ 13311800 (-) True G33076
TU41464 lncRNA upstream 615262 13633286 ~ 13633502 (-) True G33092
AMCG00019302 mRNA downstream 2434 12985747 ~ 13006328 (-) True AMCG00019302
AMCG00019303 mRNA downstream 42852 12939007 ~ 12965910 (-) True AMCG00019303
AMCG00019292 mRNA downstream 373503 12616147 ~ 12635259 (-) True AMCG00019292
AMCG00019291 mRNA downstream 394915 12600533 ~ 12613847 (-) True AMCG00019291
AMCG00019287 mRNA downstream 504212 12466126 ~ 12504550 (-) True AMCG00019287
AMCG00019312 mRNA upstream 151848 13169872 ~ 13188292 (-) True AMCG00019312
AMCG00019311 mRNA upstream 186400 13204424 ~ 13208267 (-) True AMCG00019311
AMCG00019310 mRNA upstream 439015 13457039 ~ 13471322 (-) True AMCG00019310
AMCG00019313 mRNA upstream 464168 13482192 ~ 13537109 (-) True AMCG00019313
AMCG00019315 mRNA upstream 611981 13630005 ~ 13661038 (-) True AMCG00019315
TU39603 other downstream 8072766 4932838 ~ 4935996 (-) False AMCG00019129
TU38988 other downstream 10830112 2177980 ~ 2178650 (-) True G31130
TU38924 other downstream 10925491 1955668 ~ 2083271 (-) True G31082
TU38923 other downstream 10925491 2038647 ~ 2083271 (-) False G31082
TU38861 other downstream 11298219 1705899 ~ 1710543 (-) False G31035
TU41485 other upstream 644092 13662116 ~ 13665230 (-) True G33106
TU41559 other upstream 1473867 14491891 ~ 14492218 (-) True G33163
TU41560 other upstream 1473867 14491891 ~ 14558290 (-) False G33163
TU41680 other upstream 1933818 14951842 ~ 14991996 (-) True G33259
TU41832 other upstream 2674458 15692482 ~ 15721452 (-) True G33381

Expression Profile