RNA id: AMCG00019303


Basic Information

Item Value
RNA id AMCG00019303
length 1976
RNA type mRNA
GC content 0.42
exon number 4
gene id AMCG00019303
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 12939007 ~ 12965910 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCCTGTCTCTTTAAGAAGACATCTCCAGGAGCTGAGCCAATCGGATGGCTTCAATCACACAGCAACGTGTCTGTCATGGCTGCAAGCTGCTGAAtATGTCCTGTCTGTGTTGAAATTCACCTATCCCACCCTATTCCAGGGtgtgTCTATGCTGCTCACAGCTGCTGCATGCCTTCCTCTCCATGACCCCCAGCCTCCTGCTCAGCTGCATTGGAGAAGCCCTGCTGGTTTACTCAGAGCAAATCGCTGCCGAGAGGTGACGGACAGCGAGGCAGAAGACAGGACAATGTGTGGAAGACCGCAGTCCAGAGAGAGAGGTTCTTTCAGACTCACGGAACTCCTTGTGATCTCTGCATTTTGGTCACAACTGGTCAacaatttatacatataaatcaaGGAAAACATATCAggtagattatatattttaaactaatccAAAAAGTGCTGCAGATTTGCTTCTAGACTTTCTGATAATCTCCATTGCTATATTGACAGATTGAAAGGTGCTTGTGGTTAATCTACCAAAAGGACAGTGTTTTTGGCTGTCCAGTAAGGGAACAGtgcaatgagagagaaaaaacacaatgatgCAATTCTTCTGACCAAACCCTGTGTGAAGCTCCCTGTGCCACAGCTTCTCTCCTCCAGTCTCCGCGTGGGGTCTTGACTCAGGAAACACTAGCCAGCTCTCACTGCCCCTGATCTTTGATAAGGAGTGGTTGGTGAGGAGGGGGGGACTCAGGTTACTGTGAACAATAGCTCAAACTCAGGTGGAAAAAGCCTGCCAGGCTTGCTTGGGAAGAAGCTCTTCTGAATGCAGAGAGAAAAGCCAGGGTCGGACGAGCAGACTTGATACTCTCACATGTCTCGTCACCCTGTCTGCACAGCCAGAGAACAGGTCTGCCCAGAAGCTGATCCTGACTTCTGGCTGAGAGACCTCATGGGTTGCATAACCAGAACTAAAGTTGAAGATATAATCATTACTTTTCTAATTGTTTGAggttgtttaattatttttcttggtgCATGCAGGCTATAATGATATGAATTGCATTTCACGGCATTCATGCGTTCATGCTTAGCTGGTGTTATACAGTGAAGCACAGCGCACTAGAAGTTCTCGTTTAACCTGttgcataaaaataacatttcatcaGAGACATTACAGTAGCATTTCGTAAGCACACACAAAGTAGTGTTTTGAACATCATTTCAATTGGTTGAGCAAACGTATTGCTTTGTCATACTACTATGTTGACATGTCTCTGTTGTTACTTCAAATGGTTAAGCCTTCAGACAGGAAGAAAGGAAGTCCTAGGGTTGTCCAGCACTTAACAGTGTCTATAGATAGTCTGTGAAAccaaagtgtctgtgtgtgggttttgtttcgtgaaaaacaaaatcaaaaccgAATTGGCTGACGGGAACagtacaatttattattttatgtattagtATGTGTTTAATTTTCACACTGGCCTTAAACCTTGTACTACTCGATCATAAATAGTCTAGCCTGTCTTGCAAAGATTGAGTTAAGAATTGTTTTAATCTTGGTCGCTAAGAAATTGGAGAACTTCCtcttgtgctctctctctcgctctctttttttctttttttttttttaacgaaaCATCAACTGAATAACCGCCACAATCGTTGTGTTCTAGTATTTCGTAGAGCTTATCAGTAATCTCATCACTGCAAGTACTATCTCAACTGCGTGAACATGGTAAAAACAACGCTTGTTCTGAGAAACGTGGGGGATTGTAGGAAAGTCTGTTGTACCATTCTTTTTAGAAATCTTATGGCTCAGTTTGCAATAAAGTAAGCTTTAAAAGCGAGTTTTCTTTGGGATTTTAAATTAGGGAAGGGAGAACTGGGTTATGAATTCTTGCTCTGATATTCTTTAAAAGGGTGATTTGCACAGTATGAAgtacaaagtgaaataaatgttttctatcTTTCTATAAA

Function

GO:

id name namespace
GO:0019825 oxygen binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU41149 lncRNA downstream 485380 12452597 ~ 12453627 (-) True G32844
TU41125 lncRNA downstream 521188 12414106 ~ 12417819 (-) False AMCG00019284
TU41123 lncRNA downstream 571781 12366786 ~ 12367226 (-) True G32825
TU41072 lncRNA downstream 871955 12062278 ~ 12067052 (-) True G32786
TU41067 lncRNA downstream 878756 12059624 ~ 12060251 (-) True G32784
TU41374 lncRNA upstream 138043 13103953 ~ 13106250 (-) True G33030
TU41434 lncRNA upstream 202526 13168436 ~ 13171846 (-) False AMCG00019312
TU41440 lncRNA upstream 289453 13255363 ~ 13257313 (-) True G33070
TU41446 lncRNA upstream 345593 13311503 ~ 13311800 (-) True G33076
TU41464 lncRNA upstream 667376 13633286 ~ 13633502 (-) True G33092
AMCG00019292 mRNA downstream 303748 12616147 ~ 12635259 (-) True AMCG00019292
AMCG00019291 mRNA downstream 325160 12600533 ~ 12613847 (-) True AMCG00019291
AMCG00019287 mRNA downstream 434457 12466126 ~ 12504550 (-) True AMCG00019287
AMCG00019286 mRNA downstream 475015 12455079 ~ 12463992 (-) True AMCG00019286
AMCG00019288 mRNA downstream 493821 12442688 ~ 12445186 (-) True AMCG00019288
AMCG00019302 mRNA upstream 19837 12985747 ~ 13006328 (-) True AMCG00019302
AMCG00019301 mRNA upstream 42852 13008762 ~ 13018024 (-) True AMCG00019301
AMCG00019312 mRNA upstream 203962 13169872 ~ 13188292 (-) True AMCG00019312
AMCG00019311 mRNA upstream 238514 13204424 ~ 13208267 (-) True AMCG00019311
AMCG00019310 mRNA upstream 491129 13457039 ~ 13471322 (-) True AMCG00019310
TU39603 other downstream 8003011 4932838 ~ 4935996 (-) False AMCG00019129
TU38988 other downstream 10760357 2177980 ~ 2178650 (-) True G31130
TU38924 other downstream 10855736 1955668 ~ 2083271 (-) True G31082
TU38923 other downstream 10855736 2038647 ~ 2083271 (-) False G31082
TU38861 other downstream 11228464 1705899 ~ 1710543 (-) False G31035
TU41485 other upstream 696206 13662116 ~ 13665230 (-) True G33106
TU41559 other upstream 1525981 14491891 ~ 14492218 (-) True G33163
TU41560 other upstream 1525981 14491891 ~ 14558290 (-) False G33163
TU41680 other upstream 1985932 14951842 ~ 14991996 (-) True G33259
TU41832 other upstream 2726572 15692482 ~ 15721452 (-) True G33381

Expression Profile