RNA id: AMCG00019307


Basic Information

Item Value
RNA id AMCG00019307
length 1524
RNA type mRNA
GC content 0.49
exon number 12
gene id AMCG00019307
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 13141611 ~ 13149184 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AATGCCATGATGACGTTTGAGGAGGAAAAGATGCAGATGGCCTGTGAGGACCTGAAGACGACAGAGAAGCTGTGTGAGAGTGATGACGCCGGGGTCATCGAGACCATCAAAAACAAGATCAAGAAGAATGTTGACCAGAAGTCGGCTCCCTCGGTGGTGGATCGCCTTCAGAGACAGATTATAGTAGCAGACTGTCAGGTCTATCTGGCTGTGCTGGCCTTTGTTAAACAGGAGCTATCAGCTTACATTAAAGGGGGCTGGATCCTTCGAAAGGCCTGGAAAATCTACAATAAATGCTACAGTGACATCAGTGTGCTCCAGGAGTCGTGTCAGAAGAAGGCCTCTCAGGAATCGCTGCCGTCTGATCGGGCCAATGACAACACCGTGCCCAGGGAGGGGGTGTCGGCGGAGTCTCTGAGTCGGCTGAAGGGCTCAGTGAGCTTTGGATATGGGCTCTTCCACCTGTGTATTTCTATGGTTCCTCCTCACTTGCTAAAGATCATCAACCTGTTGGGCTTCCCCGGGGACCGGCTGCAGGGTCTGTCTTCTCTCACATATGCGAGTGAAAGTAAGGACATGAAGGCCCCTCTTGCTACGTTAGCGTTACTTTGGTACCACACGGTGGTTCGGCCCTTTTTCGCTCTCGATGGGACTGATACACAGGCGGGGCTGATGGAAGCGAAGGCTATCCTTCAGAAGAAGGAAGCGGTGTATCCAAACTCCTCACTGTTCATGTTTTTCAAAGGCAGGGTTCAGAGGTTAGAGTGCCAGATTAATAGTGCCTTGACTTCATTCCACGATGCATTGGAGCTTGCAACAGATCAAAGAGAAATTcagcatgtgtgtctgtatgaaaTTGgGTGGTGCAGCATGATTGAGATGAACTTTAAAGACGCATACAAGTCCTTCGAGCGGCTGAAGAATGAGTCACGGTGGTCTCAGTGCTATTATGCTTATCTGACTGGAgtgtGCCAGGGAGCAACAGGTGATCTTGAAGGTGCAAAGACTGTCTTCAAAGATGTTCAGAAGCTCTTCAAAAGGAAGAACAATCAGATTGAGCAGTTCTCTTTGAAGAAGGCTGAGAGGCTGAGGAAAATGTCTCCCACTAAGGAGCTGTGTATTCTGGCTGCCATAGAAGTGCTCTACCTGTGGAAAGCTCTGCCCAACTGTTCATCTTCCAAACTGCAGAATATGAGCCAAGCTTTGCAGGAAGTGAATGACTCATCATACATGGGTTTAAAAAACCTTCTCCTGGGTGCCATTCATAAGTGTTTAGGCAACATAAAAGATGCCATTCAGTTGGCTGCAAGGGATGAACTGGGCCGTCAGAACAACTCCTATGTTCAGCCGTACTCGTGCTACGAACTGGGCTGCATTCTTCTAGATAATCCTGAGactaCTGGTAAAGGCAGAACATTGCTCCTGCAGGCCAAGGAGGAATTTGCTGGCtatgattttgaaaacagacTGCATGTCCGGATTCATGCCGCACTAGCATCACTGAAAGAAGTTGTTCCACAATGA

Function

GO: NA

KEGG:

id description
K24943 TTC39; tetratricopeptide repeat protein 39

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU41212 lncRNA upstream 527685 12613285 ~ 12613926 (+) True G32893
TU41211 lncRNA upstream 529078 12609401 ~ 12612533 (+) True G32892
TU41061 lncRNA upstream 1140447 12000963 ~ 12001164 (+) True G32778
TU40936 lncRNA upstream 1503731 11632358 ~ 11637880 (+) True G32674
TU41445 lncRNA downstream 162230 13311414 ~ 13311742 (+) True G33075
TU41465 lncRNA downstream 484518 13633702 ~ 13638171 (+) True G33093
TU41531 lncRNA downstream 1003618 14152802 ~ 14160703 (+) True G33141
TU41546 lncRNA downstream 1136381 14285565 ~ 14286016 (+) True G33153
TU41557 lncRNA downstream 1342708 14491892 ~ 14492206 (+) True G33161
AMCG00019304 mRNA upstream 28898 13031652 ~ 13112713 (+) True AMCG00019304
AMCG00019305 mRNA upstream 110845 13007109 ~ 13030766 (+) True AMCG00019305
AMCG00019299 mRNA upstream 155828 12978299 ~ 12985783 (+) True AMCG00019299
AMCG00019294 mRNA upstream 164299 12970975 ~ 12977312 (+) True AMCG00019294
AMCG00019298 mRNA upstream 213277 12926782 ~ 12928334 (+) True AMCG00019298
AMCG00019308 mRNA downstream 4636 13153820 ~ 13162062 (+) True AMCG00019308
AMCG00019309 mRNA downstream 65772 13214956 ~ 13236826 (+) True AMCG00019309
AMCG00019306 mRNA downstream 143534 13292718 ~ 13310822 (+) True AMCG00019306
AMCG00019314 mRNA downstream 513038 13662222 ~ 13666577 (+) True AMCG00019314
AMCG00019316 mRNA downstream 521069 13670253 ~ 13674752 (+) True AMCG00019316
TU40734 other upstream 2732114 10404639 ~ 10409497 (+) True G32539
TU40438 other upstream 3512949 9369898 ~ 9628662 (+) True G32293
TU40426 other upstream 3602400 9261374 ~ 9539211 (+) True G32286
TU40432 other upstream 3792792 9329479 ~ 9348819 (+) True AMCG00019215
TU40199 other upstream 4757019 8345455 ~ 8384592 (+) True G32130
TU41554 other downstream 1290069 14439253 ~ 14486706 (+) True G33159
TU41707 other downstream 2015164 15164348 ~ 15169841 (+) True G33283
TU41862 other downstream 2894758 16043942 ~ 16081943 (+) True G33406
TU42780 other downstream 7458290 20607474 ~ 20610889 (+) False G34170
TU42783 other downstream 7458290 20607474 ~ 20610889 (+) True G34170

Expression Profile