RNA id: AMCG00019310


Basic Information

Item Value
RNA id AMCG00019310
length 3444
RNA type mRNA
GC content 0.50
exon number 3
gene id AMCG00019310
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 13457039 ~ 13471322 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCTGCCTCCCAGTCTGAAGTCCTCCTGCTGCAGCTGGTACATAAAAGCAAGCTACAGATGCCATGAGACCGTCTGCAAGGCTTTACGAGATGGTGCTGATGGTGAGGATGACCCTTCTTGTTCTTGGCCCGCATCATCTCCTTCAAGCAAAGACCAGACATCACCAGGACCTGGGGATGGATATGACTTTGGTGAAGAGGAAGGAGGACCTGGATTGCCCTACCCTTGCCAGTTCTGCGATAAGTCTTTCAGCCGCCTCAGCTTCCTAAAGCACCACGAGCAAAGCCACAGTGACAAGCTACCGTTCAAGTGCACCTACTGCAGTCGTCTCTTCAAACACAAGCGCAGCCGCGACCGTCACATAAAGCTCCACACAGGAGACAAGAAGTATCACTGCAGCGAATGTGACGCTGCCTTTTCGCGAAGTGACCACCTGAAGATCCATTTGAAGACGCACACCTCCAACAAGCCATATAAATGTGCCATTTGCCGCCGTGGTTTCCTCTCGTCCAGTTCCCTGCATGGCCATATGCAAGTTCATGAACGGAACAAAGATGGCTCCCAGTCCCTGTCCAGGATGGATGACTGGAAACTGAAGGAGACTCAGAAGTGCAGCCAATGTGAAGAGGGATTTGATATCcctgaagagttgcagaaacATATCGCTGAGTGCCACCCGGAGTGTTCCCCACCTCAGGAAAGATCTGCCCTTCAGTGTATTTACTGCCACGAACTCTTTGCTGAGGAGAGCACTCTTTTAAGCCACATTGACCAAGTGCACAACAGAGAGAAGAAGGGCCACACATGCACCATCTGCTCTGAGCATTTCCACGCAGTGGAGGAGCTCTACAGCCACATGGATATTCACCAGCAGCCAGAATCTAGTAACCATAGCAACAGTCCTTCCTTGGTGACAGTAGGTTATACCTCCGTCTCTAGTACTACTCCAGATTCAAACCTCTCTGTGGATAGCTCAACTATGGTAGAAGTAGGCCCACCATTGCCAAAAACCCGTGGAAGGAAAAGGGCTGCACAGCAAGGAGCTGACATTGCTGTGCTGTCCTCTAAACAAGCAAAAATTACATACAGCTGCATATATTGCAACAAGCAAGTGTTTTCTAGCCTTGCTGTACTACAGATACACCTTAAGACTATGCACCTGGATAAACCAGAACAGGCTCATACCTGCCAGTATTGCTTAGAGGTGCTTCCTTCTCTCTACAATTTGAACGAACATCTCAAGCAAGTCCACGAAAACCAAGACCACAGCGCCTTGCTTGGTAGTATGTCTGCTGCGGTCCTGCAATGCAATTTCTGCCCTGAGGCACTCAGCGACCTGAATGCTTTGCAGGAACACATTCGCTGTTCGCATGGCTTTGCCAGCCCAGTTGCCAAAGAGAGCAATGCCTTCTTCTGTCCTCAGTGCTTCATGGGCTTTTTAACCGAGACCACTTTAGAGGAACACATCCGGCAGACTCACTGTGATGGGGGAAACTCACGATTTGATTCACCCTTGGCTGGGACTCCCAAGGAACCCATTGTAGAGGTTTATTCTTGTTCTTATTGCACCAACTCTCCCATTTTCAACAGTATCCTGAAATTGAACAAACATAtcaaagaaaaccacaagaatATCCCCCTTGCCCTCAATTATATCAATAACGGGAAGAAATCAAACCGAGCTATGAGTCCATCATCTCCTCTCAGTATGGAACAAACCTCCCTTAAAATAGGGCAAGGCGGTTCTTCATCCCGCTCGGCAAGTGAATTCATTTGCAACCAATGTGGTGCCAAGTATTCCAGTCTAGATATGTTCCAGACCCATCTGAAAACTCATCTAGATAGTGTTCTCCCGAAGCTGACCTGCCCACAGTGCAACAAAGAGTTTCCCAACCAGGAGTCTTTACTAAAGCATGTAACCATCCACTTCATGATCACCTCTACGTACTACATTTGTGAAAGCTGTGACAAGCAGTTTACTTCTGTGGATGACCTTCAGAAGCACCTCTTAGACAtgcacacatttgtgttttttcgcTGCACACTTTGCCAGGAGGTCTTTGACTCCAAGGTGTCGATCCAGCTCCACTTGGCCGTGAAGCACAGCAATGAGAAGAAAGTCTATCGCTGCACCTCCTGTAATTGGGACTTCCGCCATGAGTCTGACCTGCAGTTGCACGTGAAGCACAATCACCTGGAAAACCAGGGTAAAGTGCACAAGTGCATCTTCTGTGGGGAGTCCTTCGGCACTGAGGTGGAACTACAGTGTCACATCACAACCCACAGCAAGAAATACAACTGCAAATTCTGCAGCAAGGCTTTCCATGCGATCATTTTACTGGAGAAGCACTTACGCGAAAAGCACTGCGTCTTCGAGGGCAAGCCTCAGAACTGCGGCACCAATGGTTCTGCTGCCGTTCCTGAGCAGGTTCCCAAAGAGGATGCTGAGCTGCAGAGCCTCTTAGCAAATAGTCATGAATCCCATAACAGCCATGACGGCAGTGAAGAGGACGTGGACACCTCGGAACCGATGTATGGCTGTGACATCTGTGGTGCGGCCTATACCATGGATTCCCTGCTTCAGAACCACCAGTTGCGTGACCACAACATCAGGCCTGGAGAAAGCGCCTTGGTCAAAAAGAAGGCTGAGATGATCAAGGGCAATTATAAGTGTAACGTCTGCTCTAGGACTTTCTTCTCAGAAGGTGGACTGCGAGAGCATATGCAAACCCACCTTGGACCTGTCAAGCACTATATGTGTCCCATTTGTGGTGAGCGTTTCCCATCTCTGCTTACACTTACTGAACACAAAGTGACACACAGCAAGAGCCTGGACACTGGCACTTGCCGTATATGTAAGATGCCTTTGCAGAGCGAGGAGGAGTTCCTAGAGCATTGCCAGATGCATCCAGATCTGAGGAACTCGCTGACGGGCTTTCGATGTGTGGTCTGCATGCAGACAGTCACATCCACTCTAGAGCTGAAGATTCACGGCACTTTCCACATGCAGAAAACCGGCACCATGTCTAGCAACCATCCTGTCGGGCGTATTCACCACCCGCAGAAACTATACAAGTGTGCTTCTTGTCTCAAAGAGTTCCGTTCCAAGCTAGACCTAGTCAAGTTAGACATCAATGGTCTCCCTTACGGACTCTGCGCCTCATGTGTGAGCGGCAGCAAAAGCGGCAGCCCCACGGTGAACGGGAGCAAACAGCAAGCCGCGGTGGCAGGAGGTCAAGGCGAAACACTCAGCCCCACCGAGAGCAAGAGCAAAGCCACCGCTTCCAAGACGCGATGTTCCAGCTGTAATGTCAAGTTTGAGTCTGAAGCTGAGCTCCAGAACCACGTCCTATCAGTCCACAGGGACTCAATGACCGAGAGCAACAGTGGTCAGCTAAGAACACCCCAGGTGTCCCCGATGCCCAGAGATCTGAGGGACTGA

Function

GO: NA

KEGG:

id description
K24916 ZNF521, EVI3; zinc finger protein 521

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU41446 lncRNA downstream 145239 13311503 ~ 13311800 (-) True G33076
TU41440 lncRNA downstream 199726 13255363 ~ 13257313 (-) True G33070
TU41434 lncRNA downstream 285193 13168436 ~ 13171846 (-) False AMCG00019312
TU41374 lncRNA downstream 350789 13103953 ~ 13106250 (-) True G33030
TU41149 lncRNA downstream 1003412 12452597 ~ 12453627 (-) True G32844
TU41464 lncRNA upstream 161964 13633286 ~ 13633502 (-) True G33092
TU41521 lncRNA upstream 610393 14081715 ~ 14081918 (-) True G33132
TU41616 lncRNA upstream 1221383 14692705 ~ 14698412 (-) True G33204
TU41618 lncRNA upstream 1243469 14714791 ~ 14718233 (-) True G33206
TU41689 lncRNA upstream 1590452 15061774 ~ 15062351 (-) True G33268
AMCG00019311 mRNA downstream 248772 13204424 ~ 13208267 (-) True AMCG00019311
AMCG00019312 mRNA downstream 268747 13169872 ~ 13188292 (-) True AMCG00019312
AMCG00019301 mRNA downstream 439015 13008762 ~ 13018024 (-) True AMCG00019301
AMCG00019302 mRNA downstream 450711 12985747 ~ 13006328 (-) True AMCG00019302
AMCG00019303 mRNA downstream 491129 12939007 ~ 12965910 (-) True AMCG00019303
AMCG00019313 mRNA upstream 10870 13482192 ~ 13537109 (-) True AMCG00019313
AMCG00019315 mRNA upstream 158683 13630005 ~ 13661038 (-) True AMCG00019315
AMCG00019318 mRNA upstream 262643 13733965 ~ 13739371 (-) True AMCG00019318
AMCG00019317 mRNA upstream 278532 13749854 ~ 13758818 (-) True AMCG00019317
AMCG00019319 mRNA upstream 346035 13817357 ~ 13824628 (-) True AMCG00019319
TU39603 other downstream 8521043 4932838 ~ 4935996 (-) False AMCG00019129
TU38988 other downstream 11278389 2177980 ~ 2178650 (-) True G31130
TU38924 other downstream 11373768 1955668 ~ 2083271 (-) True G31082
TU38923 other downstream 11373768 2038647 ~ 2083271 (-) False G31082
TU38861 other downstream 11746496 1705899 ~ 1710543 (-) False G31035
TU41485 other upstream 190794 13662116 ~ 13665230 (-) True G33106
TU41559 other upstream 1020569 14491891 ~ 14492218 (-) True G33163
TU41560 other upstream 1020569 14491891 ~ 14558290 (-) False G33163
TU41680 other upstream 1480520 14951842 ~ 14991996 (-) True G33259
TU41832 other upstream 2221160 15692482 ~ 15721452 (-) True G33381

Expression Profile