RNA id: AMCG00019311


Basic Information

Item Value
RNA id AMCG00019311
length 738
RNA type mRNA
GC content 0.46
exon number 8
gene id AMCG00019311
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 13204424 ~ 13208267 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAAGAGGAATCTGAGGAGCATTTTCTTCGCGATGCCCGAAACGGGAATCTCAAAGGAATTCAAAAGGTGTTGCAGTCTTGGAACGAAGGTCAAGCATACATTAACATAAATTGCAAAGGCAAGACCAAATCTAATTTAGGTTGGACGCCTCTCCATCTTGGCTGTTATTTTGGACACAGGCATGTTGTGGAGGAACTCCTAAAGGCTGGTGCTACTGTAAACGTACTAAACAACATGGGAGATACTCCTCTGCATCGTGCAGCTTTCACTGGAAGAAAGGAACTTGTTATGTTGCTGTTACAGTATAATGCTTGCGCCACAGTGCTCAATGGAACAGCACAAACTCCAAAAGATGTTACTCAAGATGAAGAAATAAGAACCATGTTAGAAGCTGCAGAGAGGACTGAAGAGCGAAAGCTTGAAGAACGGCTTTTAGAAGCTGCACGGGAAGGTGATGCGAACAGAATAGCTGAACTGCTCAACAGAACAAGGCCCCCGGATATCAACTGCTCAGATGTGCTGGGTAACACACCATTGCACTGTGCTGCATACAGAGGTCAAAAACAGTGTGCACTTAGGCTCCTGAAGAGTGGAGCCAACCCCAACATCAAGAACAAAAATGAGTTCACGCTTTTTGGGATGGCGGTCCTGCTGGGTGGTTCTTCAGGATGGTCAGATGCAGATTCTAATAAACGCCGAGAGGGATGCAAACCCTTAACTCAAGCTGTTTGTACG

Function

GO: NA

KEGG:

id description
ko00603 Glycosphingolipid biosynthesis - globo and isoglobo series

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU41434 lncRNA downstream 32578 13168436 ~ 13171846 (-) False AMCG00019312
TU41374 lncRNA downstream 98174 13103953 ~ 13106250 (-) True G33030
TU41149 lncRNA downstream 750797 12452597 ~ 12453627 (-) True G32844
TU41125 lncRNA downstream 786605 12414106 ~ 12417819 (-) False AMCG00019284
TU41123 lncRNA downstream 837198 12366786 ~ 12367226 (-) True G32825
TU41440 lncRNA upstream 47096 13255363 ~ 13257313 (-) True G33070
TU41446 lncRNA upstream 103236 13311503 ~ 13311800 (-) True G33076
TU41464 lncRNA upstream 425019 13633286 ~ 13633502 (-) True G33092
TU41521 lncRNA upstream 873448 14081715 ~ 14081918 (-) True G33132
TU41616 lncRNA upstream 1484438 14692705 ~ 14698412 (-) True G33204
AMCG00019312 mRNA downstream 16132 13169872 ~ 13188292 (-) True AMCG00019312
AMCG00019301 mRNA downstream 186400 13008762 ~ 13018024 (-) True AMCG00019301
AMCG00019302 mRNA downstream 198096 12985747 ~ 13006328 (-) True AMCG00019302
AMCG00019303 mRNA downstream 238514 12939007 ~ 12965910 (-) True AMCG00019303
AMCG00019292 mRNA downstream 569165 12616147 ~ 12635259 (-) True AMCG00019292
AMCG00019310 mRNA upstream 248772 13457039 ~ 13471322 (-) True AMCG00019310
AMCG00019313 mRNA upstream 273925 13482192 ~ 13537109 (-) True AMCG00019313
AMCG00019315 mRNA upstream 421738 13630005 ~ 13661038 (-) True AMCG00019315
AMCG00019318 mRNA upstream 525698 13733965 ~ 13739371 (-) True AMCG00019318
AMCG00019317 mRNA upstream 541587 13749854 ~ 13758818 (-) True AMCG00019317
TU39603 other downstream 8268428 4932838 ~ 4935996 (-) False AMCG00019129
TU38988 other downstream 11025774 2177980 ~ 2178650 (-) True G31130
TU38924 other downstream 11121153 1955668 ~ 2083271 (-) True G31082
TU38923 other downstream 11121153 2038647 ~ 2083271 (-) False G31082
TU38861 other downstream 11493881 1705899 ~ 1710543 (-) False G31035
TU41485 other upstream 453849 13662116 ~ 13665230 (-) True G33106
TU41559 other upstream 1283624 14491891 ~ 14492218 (-) True G33163
TU41560 other upstream 1283624 14491891 ~ 14558290 (-) False G33163
TU41680 other upstream 1743575 14951842 ~ 14991996 (-) True G33259
TU41832 other upstream 2484215 15692482 ~ 15721452 (-) True G33381

Expression Profile