RNA id: AMCG00019312


Basic Information

Item Value
RNA id AMCG00019312
length 1602
RNA type mRNA
GC content 0.46
exon number 14
gene id AMCG00019312
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 13168436 ~ 13188292 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGACGTCCCCGGAAAAACAACAGTGCTCATATTGCCCCCTCTGATATCCTATCCTCCGGTCAGACCTATCCAGGGCTGGACTACTCTTTTAGACGGGGGTCTCCGCTGCGCAGTGCACTCAGTGAGGATGAGTTCTACGATGCTGTCTCTGGTGAGACGCTCTCCTGTCACTCCAACTTAGAATCGGGCTCGGAGCGTTCTCTGAGTGGATTTGAAAGTGTAGCAAGCTATTCCTTTGAAGAAGAAACCATCCAGTTCAGAAGCAACTGCAGCAGTCCCATCAAAATGTCTCAGGGAAATAGCCATGGCAATGAGGAGCCCCAGTCTAACGGAATCAAGAAACACAGatCAAGTTTACCTGCACCCATGTTTTCGAGGAATGACTTCAGTATCTGGAGTATCCTGAGGAAGTGCATTGGAATGGAACTCTCCAAAATCACTATGCCCATTATCTTCAATGAGCCTCTAAGCTTTCTGCAGCGCCTCACAGAGTACATGGAGCATACGTACCTCATCCACAAAGCAAACTCCTCCTCCGACTCGATTGAGAGGATGAAGAGTGTTGCGGCATTTGCCGTTTCTGCTGTTGCCTCACAGTGGGAAAGGACAGGAAAGCCTTTCAATCCACTCCTGGGTGAAACCTATGAGCTAGTGAGAGAGGACCTTGGTTTTAGACTAATATCAGAACAAGTGAGTCATCACCCACCCATCAGTGCATTCCATGCTGAAGGAATAGAGAATGACTTTGTTTTCCACGGATCCATTTATCCCAAGCTTAAGTTCTGGGGAAAAAGTGTGGAAGCAGAACCGAAAGGAATCATAACACTGGAACTTCCCAAaCACAATGAGGCTTACACATGGACAAATCCAACCTGCTGTGTTCACAACATCATAGTGGGACAACTGTGGATCGAGCAGTATGGCAACGTCGAAATAATCAACCATAAAACTGGAGAAAAGTGTTGCCTGAATTTCAAAGCATGTGGCCTTTTTGGCAAAGAGTTGCACAAAGTTGAAGGCTATATCCTAGATAAAAGCAAAAAGAAGTTGTGTGCACTGTATGGCAAGTGGACTGAGTGTTTGTACACGGTAGACCCAGCAACATTTGATGCGCACAAGAAGACTGACAAGAAGAACACGGAGGATAAGAAAAGCAGTAAACCAACATCCAGTGCTGAGGAACCTGATGAAATGCCATTACCAGATGCTGAAACTGTCCAAGTGATTCCTGGCAGTGAGCTCCTGTGGAGGATAGCACCCAGACCAGCAAACTCTGCACAGatgtaCAACTTCACCACCTTTGCCATGCAACTGAATGAATTAGATAAAGAAATGGAAGGTGTTATCCCTAAAACAGACTGCAGATTGAGACCAGATATACGGgcaatggaaaatggaaatatagATTTCGCAAGTGAAGAGAAAAAGAGATTAGAGGAAAAACAGAGAGCTGCCCGTAAGAACCGTTCAAAATCAGATGAGGAGTGGAAGTCCAGGTGGTTTTGCCAGGGCCCCAATCCGCACAATGGCTCCCAAGACTGGATATATGACAGTGGATATTGGGATAGAAGCTATTCTCAGCTGCCTGATATTTATTGA

Function

GO: NA

KEGG:

id description
K20174 OSBPL1_2, ORP1_2; oxysterol-binding protein-related protein 1/2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU41374 lncRNA downstream 63622 13103953 ~ 13106250 (-) True G33030
TU41149 lncRNA downstream 716245 12452597 ~ 12453627 (-) True G32844
TU41125 lncRNA downstream 752053 12414106 ~ 12417819 (-) False AMCG00019284
TU41123 lncRNA downstream 802646 12366786 ~ 12367226 (-) True G32825
TU41072 lncRNA downstream 1102820 12062278 ~ 12067052 (-) True G32786
TU41440 lncRNA upstream 67071 13255363 ~ 13257313 (-) True G33070
TU41446 lncRNA upstream 123211 13311503 ~ 13311800 (-) True G33076
TU41464 lncRNA upstream 444994 13633286 ~ 13633502 (-) True G33092
TU41521 lncRNA upstream 893423 14081715 ~ 14081918 (-) True G33132
TU41616 lncRNA upstream 1504413 14692705 ~ 14698412 (-) True G33204
AMCG00019301 mRNA downstream 151848 13008762 ~ 13018024 (-) True AMCG00019301
AMCG00019302 mRNA downstream 163544 12985747 ~ 13006328 (-) True AMCG00019302
AMCG00019303 mRNA downstream 203962 12939007 ~ 12965910 (-) True AMCG00019303
AMCG00019292 mRNA downstream 534613 12616147 ~ 12635259 (-) True AMCG00019292
AMCG00019291 mRNA downstream 556025 12600533 ~ 12613847 (-) True AMCG00019291
AMCG00019311 mRNA upstream 16132 13204424 ~ 13208267 (-) True AMCG00019311
AMCG00019310 mRNA upstream 268747 13457039 ~ 13471322 (-) True AMCG00019310
AMCG00019313 mRNA upstream 293900 13482192 ~ 13537109 (-) True AMCG00019313
AMCG00019315 mRNA upstream 441713 13630005 ~ 13661038 (-) True AMCG00019315
AMCG00019318 mRNA upstream 545673 13733965 ~ 13739371 (-) True AMCG00019318
TU39603 other downstream 8233876 4932838 ~ 4935996 (-) False AMCG00019129
TU38988 other downstream 10991222 2177980 ~ 2178650 (-) True G31130
TU38924 other downstream 11086601 1955668 ~ 2083271 (-) True G31082
TU38923 other downstream 11086601 2038647 ~ 2083271 (-) False G31082
TU38861 other downstream 11459329 1705899 ~ 1710543 (-) False G31035
TU41485 other upstream 473824 13662116 ~ 13665230 (-) True G33106
TU41559 other upstream 1303599 14491891 ~ 14492218 (-) True G33163
TU41560 other upstream 1303599 14491891 ~ 14558290 (-) False G33163
TU41680 other upstream 1763550 14951842 ~ 14991996 (-) True G33259
TU41832 other upstream 2504190 15692482 ~ 15721452 (-) True G33381

Expression Profile