RNA id: AMCG00019315


Basic Information

Item Value
RNA id AMCG00019315
length 1246
RNA type mRNA
GC content 0.53
exon number 10
gene id AMCG00019315
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 13630005 ~ 13661038 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTAGTTATTCCGTGCGGTGCGGTCTGTTGTATAGAATTGTTGTTTTGGGTTTATCTTTTTATTGAAGTTTTTCTATcttttcaggaaaacaaacatgtcGGTGGCTTTTGCAGCGCACAGGCAACGAGGGAAGGGCGACATCACTCCTGCAGCCATACAGAAGTTGCTAGATGAGAACAACCATCTCATCCAGTGTATAATGGACTTCCAGAGCAAAGGAAAGACGGCAGAATGCTCACAgTATCAACAGATGTTGCACAGAAATTTAGTGTACCTGGCCACGATAGCAGACTCAAATCAGAACATGCAGTCTCTTCTGCCAGCTCCTCCCTCACAGAATATGGCCATGGGTCCAGGTGGTATGAATCAGAGTGGCCCTCCACAGCCCCCACATGGACACAGCATGCCTTCTGAAGGGATGGTTGGTACTGGACCTCCTGCCTCTCACATGCAGAACCAGATGAATGGACAGATGCCTGGACCGAACCACATGCCCATGCCAGGACCAGGACCCAACCAACCTAATATGCCAAACAGTTCAATGAACATGCCGCCCACTAGTCATGGATCCATGGGAGGCTACAACCATGCAGTCCCCTCCTCTCAGAGCATGCCTGTGCAAAGTCAGATGAACATGAATCAAGGACAGCCCATGGGTAATTATGGCCCTCGACCCAACATGAACATGCAACCTAACCAAGGTCCAATAATGCACCAGCAGCCACCTTCTCAACAGTATAACATGCCTCAGGGAGCTGGGCAGCACTATCAGGGCCAGCAGAATCCTATGGCCATGATGGGCCAGGTCAGCCAAGGCAACCATGTAATGGGACAGAGACCGATGCCTCCGTACAGACCGCCACAGCAAGGACCTCCTCAGCAGTATGCCGGCCAAGAGGATTATTATGGGGAGCAGTACAGTCATGGTGGACAAGGCACTCCAGAAGGTGTAATTCACAGTACGCTCAGCAGCAGGAAGCCTATCCTCAAGGACCGCCTCAGCAGCAAGGCTACCCACCCCAGCAGCAGCAATATCCAGGCCAACAGGGCTACCCCGGTCAACAGCAAACCTATGGACCCTCTCAGGCAGCCCCAGGACAATACCCCAATTACACACAGGGGCAGGGACCCCAGTATGGGGGATACAGGCCTCCCCAGCCAGGCCCACCACAGCCACAACAGCAGCGCACCTACGGATATGACCAGAGCCGAGGAGCCGaatgcacagacacaggaaGAGATCGTC

Function

GO: NA

KEGG:

id description
K15623 SS18, SSXT, SYT; protein SSXT

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU41446 lncRNA downstream 318205 13311503 ~ 13311800 (-) True G33076
TU41440 lncRNA downstream 372692 13255363 ~ 13257313 (-) True G33070
TU41434 lncRNA downstream 458159 13168436 ~ 13171846 (-) False AMCG00019312
TU41374 lncRNA downstream 523755 13103953 ~ 13106250 (-) True G33030
TU41149 lncRNA downstream 1176378 12452597 ~ 12453627 (-) True G32844
TU41521 lncRNA upstream 420677 14081715 ~ 14081918 (-) True G33132
TU41616 lncRNA upstream 1031667 14692705 ~ 14698412 (-) True G33204
TU41618 lncRNA upstream 1053753 14714791 ~ 14718233 (-) True G33206
TU41689 lncRNA upstream 1400736 15061774 ~ 15062351 (-) True G33268
TU41706 lncRNA upstream 1500674 15161712 ~ 15161967 (-) True G33282
AMCG00019313 mRNA downstream 92896 13482192 ~ 13537109 (-) True AMCG00019313
AMCG00019310 mRNA downstream 158683 13457039 ~ 13471322 (-) True AMCG00019310
AMCG00019311 mRNA downstream 421738 13204424 ~ 13208267 (-) True AMCG00019311
AMCG00019312 mRNA downstream 441713 13169872 ~ 13188292 (-) True AMCG00019312
AMCG00019301 mRNA downstream 611981 13008762 ~ 13018024 (-) True AMCG00019301
AMCG00019318 mRNA upstream 72927 13733965 ~ 13739371 (-) True AMCG00019318
AMCG00019317 mRNA upstream 88816 13749854 ~ 13758818 (-) True AMCG00019317
AMCG00019319 mRNA upstream 156319 13817357 ~ 13824628 (-) True AMCG00019319
AMCG00019320 mRNA upstream 491679 14152717 ~ 14179714 (-) True AMCG00019320
AMCG00019327 mRNA upstream 955881 14616919 ~ 14638232 (-) True AMCG00019327
TU39603 other downstream 8694009 4932838 ~ 4935996 (-) False AMCG00019129
TU38988 other downstream 11451355 2177980 ~ 2178650 (-) True G31130
TU38924 other downstream 11546734 1955668 ~ 2083271 (-) True G31082
TU38923 other downstream 11546734 2038647 ~ 2083271 (-) False G31082
TU38861 other downstream 11919462 1705899 ~ 1710543 (-) False G31035
TU41485 other upstream 1078 13662116 ~ 13665230 (-) True G33106
TU41559 other upstream 830853 14491891 ~ 14492218 (-) True G33163
TU41560 other upstream 830853 14491891 ~ 14558290 (-) False G33163
TU41680 other upstream 1290804 14951842 ~ 14991996 (-) True G33259
TU41832 other upstream 2031444 15692482 ~ 15721452 (-) True G33381

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00031740 True 2085 mRNA 0.50 10 NC_007113.7 1348281 ~ 1364678 (-)