RNA id: AMCG00019318


Basic Information

Item Value
RNA id AMCG00019318
length 2206
RNA type mRNA
GC content 0.38
exon number 3
gene id AMCG00019318
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 13733965 ~ 13739371 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGAATTGGCCGGCTCTTCGATGGCACAGAGCCCATCGTGCTGGACAGTCTCAAACAGCACTACTTTGTTGACAGAGACGGACACATgttcagatacattttaaatttcctCAGGACCTCCAAGCTTTTGATTCCTGATGACTTTAAGGATTACAGCCTGCTCTACGAGGAGGCGCGCTATTTCCAGCTGCAGCCCATGCTGGGGGAGCTGGAGCGCTGGAAGCAGGACCGGGAACTGAGTCGGTTCTCGCGACCCTGCGAGTGCCTGGTGGTGCGAGTGGCCCCGGACCTGGGCGAGAGGATCACGCTAAGCGGGGACAAGGCCCTCATCGAGGAGGTCTTCCCCGAGATCGGAGACGTCATGTGCAACTCGGTCAACGCCGGCTGGAACCACGACTCCACGCACGTTATACGCTTCCCCCTTAACGGCTACTGCCATCTCAACTCCGTTCAGGTTCTGGAGCGGCTGCAGCAGAGAGGCTTTGAGATCGTGGGCTCTTGTGGTGGAGGGGTCGACTCCTCACAGTTTAGTGAATATGTCCTTCGGAGGGAAATCAAGAGGGCACAGCGTGGACCTTCAGTCATCCGGATAAAACAGGAGCCGCTGGACTAAGGACAAAATCACAGAATTGCTCAGGTTCAAAGAGCACAAGACATTTTCGAAGCAGCCAGTactgaacactttttttttttgttttttttgttttttttaaattgcagactTTGAATCCGGAgaaccaacaacaaaataaatcacacaggCATTTCTAATCTAAAGACATTTGAGGAATAACTCATTATATTTTCAGTCTTCTGGAGTTTTGTGATTAAAAGGCTCAGCATTTCCAGCTCTCATATTATACCTATtccagtgtttaaaaaaagaaaaaaaaaaaagaaaaagtttgttttaaaactttgaGACTACATCAATGAATTTCCCATTCCAGACTGACCAGGTTCATTGCAGAAAACAAGCATTTAACTACTGAAATCAGTCAGTATGGTTACGGTACTAATGCATCTTCTGTTTCTGACTATAACTTTGATGTGCAGTGAATTACACAGCCAACaggattaaacattttatatggaAAACTCTAGAAAACCAAGAAAGGTCTtggtgcttttaatttaatttggacccttttttaatttatttttttatttcaaagctaGCTCAATAAGACTTGTTTTTCAGTATTAGACgtttaaataattcaacatCTAACTGGTTTTGTCCAGATGTCAATTTTTTTCATgattacaaaaatgaatgttttgtttttccaagtaaaatattgaaaaggTGTGTGGACCTATTTCATAAATCCATAGCAAATAATTTTATGAAAGTCCTTGTCATTATTACTGTAAGgaagtttccttttttaaataatacgttTAGTGCTTTCATAACTGATGAATATTCAGAAATGCATATTCATAAACACATGCAAGACCATGTCTGCCTGGGATATCTAACCCAGCCTAAATTAAATAGACCTGAAAATTGGGAACATGAATTAATtctcacaaaaatatataaacaaaagtgTGACCTGTGTATatgtaagttttttttgtttttgtttgtttttatattgcaattgtgtgttattttgaaCTGAAATTACTGTCACTGTTACATCAACCAATCGGACAACTTATCTGACTGTTAACAAGACTCAACATACTAAGAAAACCTTCGAAGATGAACATGATTCACAACAAGTACAATAGCATTGATGAATAAAAAAGAGGGCAATTAACAGGCCAATTGAGTGCTGGTTATTAGGTATGATTTTAATTTACCTTGTTTGAAGAAGTTTACCATCTACTTTAAAGTAAACATAACCCCAGGCTACTGTCTGAACTAATGTCTGAAGTCATTAGATTtatcaaaatcataaaatatagcTGTCTATCAGCTGTCCCACACTTAAGtcttatttaattgtgtatccTTGAAGAAAGTAAATAAGAATGTAATACAAAACACtagataaatatttaacaaaagtgTAGACAATCTGTAAATCAAATTTTGTTTGCAGTATCTGAGCTTTGTATAAAGTAATTTGAATTCAGGTTGTCTCTAGTATGCTTAACATACTCAAACATGTGACTTTCTGCAGATGTTCAAGTCAGAGAAAGTTGGCCCAGTTTCAATAAACAAAGTGTCATGGACACCATTTTAGAACAGA

Function

GO:

id name namespace
GO:0051260 protein homooligomerization biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU41464 lncRNA downstream 100463 13633286 ~ 13633502 (-) True G33092
TU41446 lncRNA downstream 422165 13311503 ~ 13311800 (-) True G33076
TU41440 lncRNA downstream 476652 13255363 ~ 13257313 (-) True G33070
TU41434 lncRNA downstream 562119 13168436 ~ 13171846 (-) False AMCG00019312
TU41374 lncRNA downstream 627715 13103953 ~ 13106250 (-) True G33030
TU41521 lncRNA upstream 342344 14081715 ~ 14081918 (-) True G33132
TU41616 lncRNA upstream 953334 14692705 ~ 14698412 (-) True G33204
TU41618 lncRNA upstream 975420 14714791 ~ 14718233 (-) True G33206
TU41689 lncRNA upstream 1322403 15061774 ~ 15062351 (-) True G33268
TU41706 lncRNA upstream 1422341 15161712 ~ 15161967 (-) True G33282
AMCG00019315 mRNA downstream 72927 13630005 ~ 13661038 (-) True AMCG00019315
AMCG00019313 mRNA downstream 196856 13482192 ~ 13537109 (-) True AMCG00019313
AMCG00019310 mRNA downstream 262643 13457039 ~ 13471322 (-) True AMCG00019310
AMCG00019311 mRNA downstream 525698 13204424 ~ 13208267 (-) True AMCG00019311
AMCG00019312 mRNA downstream 545673 13169872 ~ 13188292 (-) True AMCG00019312
AMCG00019317 mRNA upstream 10483 13749854 ~ 13758818 (-) True AMCG00019317
AMCG00019319 mRNA upstream 77986 13817357 ~ 13824628 (-) True AMCG00019319
AMCG00019320 mRNA upstream 413346 14152717 ~ 14179714 (-) True AMCG00019320
AMCG00019327 mRNA upstream 877548 14616919 ~ 14638232 (-) True AMCG00019327
AMCG00019326 mRNA upstream 981488 14720859 ~ 14731647 (-) True AMCG00019326
TU41485 other downstream 68735 13662116 ~ 13665230 (-) True G33106
TU39603 other downstream 8797969 4932838 ~ 4935996 (-) False AMCG00019129
TU38988 other downstream 11555315 2177980 ~ 2178650 (-) True G31130
TU38924 other downstream 11650694 1955668 ~ 2083271 (-) True G31082
TU38923 other downstream 11650694 2038647 ~ 2083271 (-) False G31082
TU41559 other upstream 752520 14491891 ~ 14492218 (-) True G33163
TU41560 other upstream 752520 14491891 ~ 14558290 (-) False G33163
TU41680 other upstream 1212471 14951842 ~ 14991996 (-) True G33259
TU41832 other upstream 1953111 15692482 ~ 15721452 (-) True G33381
TU42573 other upstream 5703024 19442395 ~ 19448573 (-) True AMCG00019419

Expression Profile