RNA id: AMCG00019320


Basic Information

Item Value
RNA id AMCG00019320
length 4019
RNA type mRNA
GC content 0.43
exon number 15
gene id AMCG00019320
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 14152717 ~ 14179714 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGatatttattttcacagtttcctATGCTAACATtgtcatttccatttttgtctcCTCTTTCCCAGTGAGATTTGTTGACTGCGGCAAAAATGGACAACTTCAGTATGAAATCAGTGACCCAGCAGACTTCCGGATAGGTGGTGATGGAGTGGTTTATGCTGCGAGAAGTTTCCATGTTTCTCACAAGCAGACATTTGTGGTAAAAGCACAGGATTCGGAGACCCAAGAGCAATGGCAGACAGAAGTGAAATTGACCCACAGGCCATCACCCAGCCAAACGTTGCAGCATGGGACGAAATCAGGTGCTCCAGAGGTGTCCCAGCAGGTCCAGGAAATTGTATTTCCAAAGCAACACCCAGACAGCAGTGGGCTGCTGAAGCGCCTGAAGAGAGATTGGGTTATCCCCCCAATCAATGTTCCAGAAAACTCAAGGGGCCCTTTCCCACAGGAGCTTGTCAGAaTTAGGTCAGACCGTGATAAAAATCGCTCCCTGCGTTACAGCGTCACAGGACCTGGTGCCGACCAGCCTCCTACCGGGATCTTCATCATTAATCCAATTTCAGGACAGCTGTCTGTGACTAAGCCTTTGGATCGGGAACAAATATCTAACTTTCATctAAGGGCACATGCAGTGGATCTGAATGGAAACCAGGTGGAGAATCCAATCGACATTGTAATCAATGTGATTGACATGAATGACAACAGACCTGAATTTCTGCACCAGATCTGGAATGGCACTGTTCCTGAAGGGTCAAAGCCAGgaACTTTTGTAATGACTGTCACTGCTATTGACAAGGATGATCCCAAATCTGACAATGGAATTTTGCGTTACAAGATATTGTCTCAAAATCCTGAAAGCCCTTCTTCGAACATGTTCACCATTAACAATCAGACTGGAGACATCATCACAGTAGCTGCAGGACTTGACAGAGAGaaagtACCGCAATACACTTTAATAATTCAGGCAACTGATATGGAGGGAAACCCGACATATGGGCTCTCTAACACAGCAACTGCTGTTATCAAAGTGACAGATGTCAATGACAACCCTCCTGAGTTCACTGCTGACACCttctATGGAGAGGTGCCAGAAAATCGTGTAAATGTTATTGTTGCCAACTTAACTGTGACGGATAAAGACCAGCCAAATACACCTGCCTGGAACGCAGTGTACAGAATCACTGGAGGAGATGCCACGGGCAGATTCTCTATCCCCACAGACCCCAACACTAATGAGGGCTTGGTTACTGTTGTCAAGCCTATTGACTACGAGATCAGTAGGACGTTTGTGCTAACTGTGGTTGCAGAAAATCAAGTGCCTCTGGCCAGGGGCATCCATCTTCCTCGTCAGTCAACTGCAACAGTCTCCATTAAAGTTATTGATGTGAATGAGAGTCCTTATTTTGAGCCAAACCCCAAGCTTATCAAACTGGAAGAAGGCTTACCAGCAGAATCAATGTTAACAACCTTTACTGCCCAGGACCCTGATCGTTTCATGCAGCAGACAATAAGatactCAAAGCTTTCAGATCCTGCAAACTGGCTGAAAATTGACCCTTCCAGTGGCCGTATTTCTACAATTGCAGTTCTCGATAGAGAGTCTCCTTATGTGAAGAATAATTTGTATAATGCTACATTCCTTGCATCAGACAATGGTGTCCCTCCAGCCAGTGGAACTGGCACACTGCAGATTTTTCTGCTGGATATCAATGACAATGCTCCACAAGTGTTTCCTCAAGAGGCAGAGATCTGTGAAAAACCAGAACCCAATGCCATCAATATCACAGCTGTTGATGGCGACATCAACCCCAATGCTGGCCCCTTTGCCTTTGAACTTGCACTCAAGCCTCCAGATGTGAGGAAGAACTGGACCATTACTCGTCTGAATGGTGATTATGCCCAGTTGAGTCTTAAGATCAGTTTCCTTGAAAGTGGCATCTATGAGGTCCCCATCCTAATCACGGACTCGGGTAACCTTCCCATGTCCAACACCACCTATCTCCGAGTGAAGGTGTGTCAGTGCGACCACAATGGTGACTGTGCCGATGTGGAGCGCATCATTGCGGCCGGCTTGGGGACAGGAGCTATCATTGCCATTCTGCTTTGCATCATTATCTTGCTCATCCTCGTCCTGTTGTTCGTGGTGTGGATGAAGCGTCGTGACAAGGAACGGCAAGCCAAGCAGCTGCTGATTGATCCCGAGGATGACGTGCGTGACAACATACTGAAATACGACGAGGAGGGGGGCGGAGAGGAGGATCAGGATTATGATCTGAGCCAGCTTCAGCAGCCTGATACAGTAGAGCCGGATGCCATCAAGCCTGTTGGTATTAGACGTCTTGATGAGAGACCAATTCATCCCGAGCCCCAGTATCCAGTAAGATCAGCTGCTCCTCACCCAGGGGATATTGGTGACTTCATTAATGAgGGACTTAAGGCTGCAGACAACGACCCAACAGCTCCACCCTATGACTCCCTGTTGGTGTTTGACTATGAAGGCAGTGGATCCACAGCAGGCTCTTTGAGCTCCCTCAACTCTTCCAGTAGTGGAGGCGACCAGGACTATGATTACCTCAACGACTGGGGACCAAGGTTTAAGAAACTTGCAGACATGTATGGTGGAAACGACGACTAATTAAAAATTGAGTGGCACCTTTTTTATGGGACAAGGACAGCTTCTAAAACCGATATTCCCGAAGAgagatcaaacaaaacaaacaaaaaaacacaaaaaaacacaaaaaaagctaGGCTTTAACTTTGTAGTCTACTAGCACATATGCTTGTTGAAGGCTTTGGCATAGGCTGCAATCAAATTCGAGCTCAGAGGGAACATTGGTAAACTGACACTGTTTGGATCGTTGATATTAAAAGAGCGCTCAGTTACACTTGAATTTCACAGTACAGAAGCACTGGGATTTTATGTgcctttttgtacatttttggaTCTGAATACTTAGTTTTATGTTCAAGGCTTTAATGGTACTGACTTTTGGAGTGATTTCAAAACTAAGGAAGTATGTTAAAATGGTATGCTTGTACATGCTTTTTGGTTACACCATACTGCtgtttgtttaatacaaatatttaagcgaatggggaaaaaaatatgaaaaagtcaTGGAAGGATCTTTGTTAGCTTGGAGGGGGAGAAACACCTGAAAACAGCAATGTACAGTGCGCTAGACTTTTAGATAGATTTTTTCACTAAAAATTTTAAACTTATGCAGCTGGTTGCAAATAAAGGGAGTCATAAATCATCATTTTGTAGCGgaatcagtttttgtttttctgaagtgGTATAGTATTTTtcgaaaatgtttattttgttctaatcCATGTACACTTTATTTGCCTTAGTCAACCTCTGGTACTTTGATTTTTACTTCACTGTAAAGAAAATGCGTGTACATAATGTTTTTTGGCGTAGTCTATGAAGAAGTGCAAAAAGTTCAGAacttgtatatgtataatttggACTACAGATTCAagttttttgcatgtttttatcttttcattataaaaaggTATTTCCAaaatttatttacaaaacaaaatgacatttaCACAAATGGGTGACATAATGGAAAGTAAGAAATAGCCTTTTGTAAAAATAGGAATCTAATCAGCACAACTGTTTGAATTCGTACCAAAAAAGGGGGTGTTATGACACCAGTGGCACTAATAACTGAAACAGCTTTAAGACTGGAAAGGTTTTTGACGGCGGCTTTGCGGATAATATGTACcagaatacaaattatacatcTCTGACCCCAACAATCCGAATAAAATGCTAATTTTGGAGCTAGTGACTGTTTCTGAATTGTTTTTTCCACTTCACTGTGTCTGGATCTCTGTAAAAAGAAAGTCCAATGTTCTTAACTCATTTGGTTTGATAGAATGACATTGTTTGATAGTCTAATTAAATTTTCTCTgtacagttttgtgtgtgtgtgcatgtgtgtgtatgtctgtgtctgtcacacacacaaggcAAATTTACTGTATACTGCTTCC

Function

GO: NA

KEGG:

id description
K06736 CDH2, CDHN, CD325; cadherin 2, type 1, N-cadherin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU41521 lncRNA downstream 70799 14081715 ~ 14081918 (-) True G33132
TU41464 lncRNA downstream 519215 13633286 ~ 13633502 (-) True G33092
TU41446 lncRNA downstream 840917 13311503 ~ 13311800 (-) True G33076
TU41440 lncRNA downstream 895404 13255363 ~ 13257313 (-) True G33070
TU41434 lncRNA downstream 980871 13168436 ~ 13171846 (-) False AMCG00019312
TU41616 lncRNA upstream 512991 14692705 ~ 14698412 (-) True G33204
TU41618 lncRNA upstream 535077 14714791 ~ 14718233 (-) True G33206
TU41689 lncRNA upstream 882060 15061774 ~ 15062351 (-) True G33268
TU41706 lncRNA upstream 981998 15161712 ~ 15161967 (-) True G33282
TU41710 lncRNA upstream 1003066 15182780 ~ 15184537 (-) True G33285
AMCG00019319 mRNA downstream 328089 13817357 ~ 13824628 (-) True AMCG00019319
AMCG00019317 mRNA downstream 393899 13749854 ~ 13758818 (-) True AMCG00019317
AMCG00019318 mRNA downstream 413346 13733965 ~ 13739371 (-) True AMCG00019318
AMCG00019315 mRNA downstream 491679 13630005 ~ 13661038 (-) True AMCG00019315
AMCG00019313 mRNA downstream 615608 13482192 ~ 13537109 (-) True AMCG00019313
AMCG00019327 mRNA upstream 437205 14616919 ~ 14638232 (-) True AMCG00019327
AMCG00019326 mRNA upstream 541145 14720859 ~ 14731647 (-) True AMCG00019326
AMCG00019330 mRNA upstream 597094 14776808 ~ 14782550 (-) True AMCG00019330
AMCG00019328 mRNA upstream 657516 14837230 ~ 14895216 (-) True AMCG00019328
AMCG00019329 mRNA upstream 746987 14926701 ~ 14937229 (-) True AMCG00019329
TU41485 other downstream 487487 13662116 ~ 13665230 (-) True G33106
TU39603 other downstream 9216721 4932838 ~ 4935996 (-) False AMCG00019129
TU38988 other downstream 11974067 2177980 ~ 2178650 (-) True G31130
TU38924 other downstream 12069446 1955668 ~ 2083271 (-) True G31082
TU41559 other upstream 312177 14491891 ~ 14492218 (-) True G33163
TU41560 other upstream 312177 14491891 ~ 14558290 (-) False G33163
TU41680 other upstream 772128 14951842 ~ 14991996 (-) True G33259
TU41832 other upstream 1512768 15692482 ~ 15721452 (-) True G33381
TU42573 other upstream 5262681 19442395 ~ 19448573 (-) True AMCG00019419

Expression Profile