RNA id: AMCG00019334


Basic Information

Item Value
RNA id AMCG00019334
length 879
RNA type mRNA
GC content 0.54
exon number 1
gene id AMCG00019334
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 15030353 ~ 15031231 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCCAGATCTGGTGACAGAACATCCACCTTTGACCCAACTCACAGTGATACTCTTCTACATGGTCTAAACCTCCTGTGGAGAAAGCAGCTTTTCTGTGATGTGACGCTCACTGCCCAGGGACAGCAGTTCCATTGCCACAAAGCAGTGCTGGCGTCCTGCTCTCAGTACTTCAGGTCTCTGTTCTCCAGTCATCCCCTCAACAATGAGGGCATTTCTAACAAGGACCAGGGGAGTGGTGggaccccctcctcctcccctgaTGAGAAGCTCATAGCCAGTCCCAGATCCATCAACAACTTGGTGCTCCAAGGCTGCTCCTCCATTGGTCTCCGGCTGGTCTTGGAGTACCTATACACTGCCAATGTGACCCTGTCCCTGGACACTGTGGAAGAAGTGCTGTCTGTCAGCAAGATCCTCAACATCCCTCAGATCACTAAGCTCTGTGTGCAGTTCCTCAATGACCAGATCTCCGTGCAGAACTACAAGCAGATCTGCAAGATCGCAGCGCTCCACGGTCTGGACGAGACTAAAAAACTGGCCAACAAGTACCTAGTGGAGGATGTGCTGCTGCTGAATTTTGAGGAGATGTGCGCCATGCTGGACTCTCTGCCACCCCCAGTGGAGTCGGAACTGGCCCTCTTCCAGATGTCCGTGCTGTGGTTAGAACATGACCGAGAAACCCGCATGCAGTACGCCCCAGACTTGATGAAGAGACTGCGGTTTGCCCTGATCCCAGCCCCAGAACTGGTAGAGAGGGTTCAGTCAGTAGACTTCATGAGGAGTGACCCTGTTTGCCAGAAGCTGCTCTTGGACGCCATGAACTACCACCTGATGCCTTTCAGACAGCACTGCCGACAGAGCATGGCCAGCAGGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU41618 lncRNA downstream 312120 14714791 ~ 14718233 (-) True G33206
TU41616 lncRNA downstream 331941 14692705 ~ 14698412 (-) True G33204
TU41521 lncRNA downstream 948435 14081715 ~ 14081918 (-) True G33132
TU41464 lncRNA downstream 1396851 13633286 ~ 13633502 (-) True G33092
TU41446 lncRNA downstream 1718553 13311503 ~ 13311800 (-) True G33076
TU41689 lncRNA upstream 30543 15061774 ~ 15062351 (-) True G33268
TU41706 lncRNA upstream 130481 15161712 ~ 15161967 (-) True G33282
TU41710 lncRNA upstream 151549 15182780 ~ 15184537 (-) True G33285
TU41716 lncRNA upstream 222801 15254032 ~ 15256023 (-) True G33291
TU41846 lncRNA upstream 826946 15858177 ~ 15931208 (-) False G33393
AMCG00019333 mRNA downstream 12287 15003452 ~ 15018066 (-) True AMCG00019333
AMCG00019332 mRNA downstream 30284 14993808 ~ 15000069 (-) True AMCG00019332
AMCG00019329 mRNA downstream 93124 14926701 ~ 14937229 (-) True AMCG00019329
AMCG00019328 mRNA downstream 135137 14837230 ~ 14895216 (-) True AMCG00019328
AMCG00019330 mRNA downstream 247803 14776808 ~ 14782550 (-) True AMCG00019330
AMCG00019335 mRNA upstream 107071 15138302 ~ 15153516 (-) True AMCG00019335
AMCG00019339 mRNA upstream 274692 15305923 ~ 15314117 (-) True AMCG00019339
AMCG00019338 mRNA upstream 306440 15337671 ~ 15343274 (-) True AMCG00019338
AMCG00019341 mRNA upstream 326777 15358008 ~ 15358663 (-) True AMCG00019341
AMCG00019340 mRNA upstream 328469 15359700 ~ 15360068 (-) True AMCG00019340
TU41680 other downstream 38357 14951842 ~ 14991996 (-) True G33259
TU41560 other downstream 472063 14491891 ~ 14558290 (-) False G33163
TU41559 other downstream 538135 14491891 ~ 14492218 (-) True G33163
TU41485 other downstream 1365123 13662116 ~ 13665230 (-) True G33106
TU39603 other downstream 10094357 4932838 ~ 4935996 (-) False AMCG00019129
TU41832 other upstream 661251 15692482 ~ 15721452 (-) True G33381
TU42573 other upstream 4411164 19442395 ~ 19448573 (-) True AMCG00019419
TU42823 other upstream 5712299 20743530 ~ 20765496 (-) True AMCG00019446
TU43148 other upstream 8116630 23147861 ~ 23199608 (-) True G34470
TU43838 other upstream 14486765 29517996 ~ 29521984 (-) True G35067

Expression Profile