RNA id: AMCG00019335


Basic Information

Item Value
RNA id AMCG00019335
length 1166
RNA type mRNA
GC content 0.39
exon number 8
gene id AMCG00019335
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 15138302 ~ 15153516 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGCATGAAGCATGCATGCGAGACATCAGTGAATTGCAATGGCATCTCAAATTCAAAAAGGAAAGACTGACACAAGTGAAAAACCGACTGATGCAGACAGAAGTATTGAACCAAAGGCTGAAAGAAGACATTGATTTTGTGAAGAAACATGGCCCGCTTGTGAAGGAGAAATTAGAACTGGAGAGCAGTGTTATGAATCAAATTAACAATGCTCAAATGGAGgtaatagaattaaaattgaaaatagaAGCTCAAATAAAGAAATTCCAACAGTTAACAGAAGATACCTCAGAGCTTCAGAGACAAATTGAAATGACAaaaTCTGGAGGTGAAATTGAGACTTCTCAATTACAACAAGAATGCAATAATAAACGCCAAGCTCTCCTGGCTCTacatgataaaaacaaagagtGTGAGCTGGAGATTGAAgacttaattattaaaattcaggagagTGAGCACTCAGCTGTGCAGCTGGAGAAAGACAGGCAGAAGATGCTGCAGAAAATCAGCCAGAATGaggaacacagacacagggcgACGGAAGAGCTCTCCCAAGTGGCTGCGGTTCACAGTGCAACCAAGGAAAAGCTGGAGGACCTGGAACAGCAGACGTTTATGGAGGAGCAGAGGATGAGGGAAATttcagaaaacatgaaaaaacagataatgAGTGAAATGAAAGCACTTGCAATTATCAAGGGAAAAATAGAATCCAATAAGACAGAATTACTGCAAagtcaaacaaacacagaccaagagaaaaaaagtaaGCTGAAGGAGCTTGAAGATGCAGCTTCTGTCACCTTGaaacttgaaaatgaaatggaagaGTTTAGAAAGCGATACCATGAAACAAAAGAGGAAAGGCATGCAGCAGTTTCAAAGGAACTGAATCATGTTTTAAGCAGGACTGAGGACCTCAGAAAGAAGTCTGCGGATTATAAAATCTCAGCGGATTTAATGGAAAAAGCAGGCAAAGCAATACCAGATGCCATTGATAAACTGCAACTTGATTTTTATGACATGGAATTCAAACACAAAAGCGCTACCTATATCATTAACGACCTTCAGGATGAGATCTCAAACTGCAAAGACAGAATAAAACTGTCTGAGGAGACAAATACATCTCtgtataaaaacagacaaaaaacaatggAAGAGACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU41689 lncRNA downstream 75951 15061774 ~ 15062351 (-) True G33268
TU41618 lncRNA downstream 420069 14714791 ~ 14718233 (-) True G33206
TU41616 lncRNA downstream 439890 14692705 ~ 14698412 (-) True G33204
TU41521 lncRNA downstream 1056384 14081715 ~ 14081918 (-) True G33132
TU41464 lncRNA downstream 1504800 13633286 ~ 13633502 (-) True G33092
TU41706 lncRNA upstream 8196 15161712 ~ 15161967 (-) True G33282
TU41710 lncRNA upstream 29264 15182780 ~ 15184537 (-) True G33285
TU41716 lncRNA upstream 100516 15254032 ~ 15256023 (-) True G33291
TU41846 lncRNA upstream 704661 15858177 ~ 15931208 (-) False G33393
TU41848 lncRNA upstream 774929 15928445 ~ 15931208 (-) True G33393
AMCG00019334 mRNA downstream 107071 15030353 ~ 15031231 (-) True AMCG00019334
AMCG00019333 mRNA downstream 120236 15003452 ~ 15018066 (-) True AMCG00019333
AMCG00019332 mRNA downstream 138233 14993808 ~ 15000069 (-) True AMCG00019332
AMCG00019329 mRNA downstream 201073 14926701 ~ 14937229 (-) True AMCG00019329
AMCG00019328 mRNA downstream 243086 14837230 ~ 14895216 (-) True AMCG00019328
AMCG00019339 mRNA upstream 152407 15305923 ~ 15314117 (-) True AMCG00019339
AMCG00019338 mRNA upstream 184155 15337671 ~ 15343274 (-) True AMCG00019338
AMCG00019341 mRNA upstream 204492 15358008 ~ 15358663 (-) True AMCG00019341
AMCG00019340 mRNA upstream 206184 15359700 ~ 15360068 (-) True AMCG00019340
AMCG00019343 mRNA upstream 379719 15533235 ~ 15551028 (-) True AMCG00019343
TU41680 other downstream 146306 14951842 ~ 14991996 (-) True G33259
TU41560 other downstream 580012 14491891 ~ 14558290 (-) False G33163
TU41559 other downstream 646084 14491891 ~ 14492218 (-) True G33163
TU41485 other downstream 1473072 13662116 ~ 13665230 (-) True G33106
TU39603 other downstream 10202306 4932838 ~ 4935996 (-) False AMCG00019129
TU41832 other upstream 538966 15692482 ~ 15721452 (-) True G33381
TU42573 other upstream 4288879 19442395 ~ 19448573 (-) True AMCG00019419
TU42823 other upstream 5590014 20743530 ~ 20765496 (-) True AMCG00019446
TU43148 other upstream 7994345 23147861 ~ 23199608 (-) True G34470
TU43838 other upstream 14364480 29517996 ~ 29521984 (-) True G35067

Expression Profile