RNA id: AMCG00019339


Basic Information

Item Value
RNA id AMCG00019339
length 573
RNA type mRNA
GC content 0.51
exon number 4
gene id AMCG00019339
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 15305923 ~ 15314117 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCCCCGGCGCACAGCTACTCCAGCTACGATTCAGGAAAGAACGAGAGTGTGGGCGGCGGAGTGGAGGACCTGTCCCTCAGTCGtgctgatgaagatgatgatgatcacGATGACCAGGAAGACTGTGAGAAGGCCATGGAGGCTGAAGGAGTGGAGGCTGAGAGACTCAAGGCCTTCAATATGTTTGTCAGGCTGTTTGTAGATGAGAACTTGGACCGCATGGTCCCAATATCTAAGCAGCCCAAAGAAAAGATCCAGGCTATCATTGACTCATGTAGGCGACAGTTCCCTGAGTATCAGGAACGTGCCCGGAAACGTATTCGCACTTACCTGAAGTCCTGCAGGAGGATGAAAAGGAATGGTTTTGACGCGGTGAGTCCCACAAACCCAGACCCAGCCTGCATCAAAACCCTGCCATGCACAAATACCCttcctttaattatgaCACTTTTCATTAAATCCCGGCCTATTCCTTCACACCTTacttcagcagcagcagagaaCATTTTGGCCTCGGCCTGTGAGAGTGAAAGCAGGAATGCCGCTAAGAGGATGCGCCTGGACAGACCACAG

Function

GO:

id name namespace
GO:0016812 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU41716 lncRNA downstream 49900 15254032 ~ 15256023 (-) True G33291
TU41710 lncRNA downstream 121386 15182780 ~ 15184537 (-) True G33285
TU41706 lncRNA downstream 143956 15161712 ~ 15161967 (-) True G33282
TU41689 lncRNA downstream 243572 15061774 ~ 15062351 (-) True G33268
TU41618 lncRNA downstream 587690 14714791 ~ 14718233 (-) True G33206
TU41846 lncRNA upstream 544060 15858177 ~ 15931208 (-) False G33393
TU41848 lncRNA upstream 614328 15928445 ~ 15931208 (-) True G33393
TU41877 lncRNA upstream 957950 16272067 ~ 16311866 (-) True G33419
TU41928 lncRNA upstream 1304185 16618302 ~ 16618691 (-) True G33461
TU42002 lncRNA upstream 1729901 17044018 ~ 17044239 (-) True G33531
AMCG00019335 mRNA downstream 152407 15138302 ~ 15153516 (-) True AMCG00019335
AMCG00019334 mRNA downstream 274692 15030353 ~ 15031231 (-) True AMCG00019334
AMCG00019333 mRNA downstream 287857 15003452 ~ 15018066 (-) True AMCG00019333
AMCG00019332 mRNA downstream 305854 14993808 ~ 15000069 (-) True AMCG00019332
AMCG00019329 mRNA downstream 368694 14926701 ~ 14937229 (-) True AMCG00019329
AMCG00019338 mRNA upstream 23554 15337671 ~ 15343274 (-) True AMCG00019338
AMCG00019341 mRNA upstream 43891 15358008 ~ 15358663 (-) True AMCG00019341
AMCG00019340 mRNA upstream 45583 15359700 ~ 15360068 (-) True AMCG00019340
AMCG00019343 mRNA upstream 219118 15533235 ~ 15551028 (-) True AMCG00019343
AMCG00019349 mRNA upstream 314372 15628489 ~ 15630001 (-) True AMCG00019349
TU41680 other downstream 313927 14951842 ~ 14991996 (-) True G33259
TU41560 other downstream 747633 14491891 ~ 14558290 (-) False G33163
TU41559 other downstream 813705 14491891 ~ 14492218 (-) True G33163
TU41485 other downstream 1640693 13662116 ~ 13665230 (-) True G33106
TU39603 other downstream 10369927 4932838 ~ 4935996 (-) False AMCG00019129
TU41832 other upstream 378365 15692482 ~ 15721452 (-) True G33381
TU42573 other upstream 4128278 19442395 ~ 19448573 (-) True AMCG00019419
TU42823 other upstream 5429413 20743530 ~ 20765496 (-) True AMCG00019446
TU43148 other upstream 7833744 23147861 ~ 23199608 (-) True G34470
TU43838 other upstream 14203879 29517996 ~ 29521984 (-) True G35067

Expression Profile