RNA id: AMCG00019344


Basic Information

Item Value
RNA id AMCG00019344
length 2226
RNA type mRNA
GC content 0.38
exon number 3
gene id AMCG00019344
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 15566655 ~ 15581014 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttcccaagaatgtacattttaaattacattttaatggttttaattagaTTTCAGAAGTTCTGCTTTTGGATGTGTAAGTATATAGGTTTAATTAAACTACCACACCGTTTCAGAAAATAAGGGAACAAGCTCCATATGATAGGCTATATTTGCTAATCATCCAAGTGGTATcatacagaaaaacaagcatTCCATTATTTGAGAGATGGTTAAAATAAGGTCTGTTTGGTGGCTGTCTCTTGCATCgcattgtgtgttttggtgtCAGCTTACATTGTTTCCCTAACTGATGAAAGAGACTCAGCACATGCATTGTTTTCAGACATGTACATAAATTATGCTTAGAACTACGGTTTCACTAGAAAGTATAACATATGTCATGTTCCAGTGATCATTCTCCCATCTACCTCTTAGGagtgttcatttttttcttatacacATATTGTAGgataaatataatgtttcaataatgtaaaatgGTGTTTTAAGAATAGAAACATTCTCCTGCAGGTTGCAGATGCTGAAATCTCAGAGTTTTCTTCTGATGGGGAGAGTGTGGTGTCCAGGTCCCAGGCCAGCACGGCTCAGCCCCAATCACAGCCATGCCAGGCCAGTGGAAGGTCTGCCAGTGACTGGGTCAGGTCTGCTCAGGCTCTGCTGCAGACGCCTCATAAACAGGCCGACAGAAAGTTCAAGACCCCAGAAGATTCTgccaagaagaaaaacaaattcctGAGGGGAGGCCTGGCCGAGCGACTCAGTCGGCTGCAGTGCAGACAGAGGTCTGCCATCAGCTTCTGGAGGCATCAATCACCTTCAGCCAGTAAAACCCCGGCAGTGTGTAAAGCTGGGGTACTGGTTCTGCAGGTGCTGCAGGTTTGGGAGGAGGGCTCTGTTCAGGTTGCCCTCTGCCAGCTGTTTGAGCAGCCCTCTCCAGATGGCAGCGCCCGCAGTCCCTTTCCCTCTGCCGAGGCCCGGCTGCAGGTTCTGTTCAGCAGAGACACAGCCACCCACCTAGTGCCACGTCCTACAGACATTGTACATGTGTACCCCCCATGGTTAGTACCCATTTACCTCTCTCTTGCAtttactatataaataaaaagtgggTTACACATTCGTTCAGATGTAGATGGCAATTGTTGTCATCTATATTCATATTGTACTGATGAAAATCAGTAAAGCACTAAATGTGATATCTTCCATCTTGCTCTGTAATGGTTcatctttctttaaattatttgggattgttttcattctgtaaGTGTCTTAGCCCATTGAACTAAATGATGTAAAGCACTTGTACTATTGTTAATTTTGCAATAGAATAGTCACACCATCATAGTATTGTAAGTAATGACTGAGTGAAAAtagtgatgtttgttttttgtcccaCCAAATGtgtattcttatatattttgtatacttccatctatataaaaaaagcttGATTAACAAAGTGTAAAAGATGAGTTGTagataaagataaagaaaaatggTCTTGGCAGTTAGATTATACAAGTTTAAAGCTGTCCGTTGTTAGaggttatttttcttccctctttGCCGAACCCTTCATATAAAAAATAGGACAAACCCTTTCCTtaattgtctatttttattttttttaacctgattTCTTGAATGTTTGCCTATTTTTTTGCTTTACTCAAACAGGTCTTATCTGTGCACATTGTAATTTTAggcataaatgaataaacagtaCAAATGTATGTAGCAAGATTTTACACCCAATTGTGTAGgctaaaaataaattgactaTTTAACTTGCCTTTTTCTTTATACTTAATTAAATCTGTTAGCATGGATTATTCAGTAAATGCTATTGTTTTCCTTATGTTTGTATTCTGATTAAGTACAAAGTTATTTCTTctcccttttttttgtttaaattgactCTTAAAAGTAGGCCCCCTCTAatgattatttcattttttcatagtTAAGCGATGTTTGTGGCATCCCTATTGGCAAATCATGTTAGGTTTAATACCTTTGTAATCAGTTTACCAGTGTAATAGTATACAAATGTTGCCATTGCTCCCATGCAATATCTCTTGGGgcttcattttgtttatatttctccAAACAAAGCAGTAACCCATTCCCTGAATTATGCTACACTACATGAATGAGATTGTGCAAAGAAAGGAAACTTTAATAAACTCGATGTCTTGACAAAATAGTTGTACTTGACTCCTGCAG

Function

GO: NA

KEGG:

id description
K22806 SPIDR; DNA repair-scaffolding protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU41737 lncRNA upstream 33459 15484078 ~ 15533196 (+) True G33307
TU41557 lncRNA upstream 1074449 14491892 ~ 14492206 (+) True G33161
TU41546 lncRNA upstream 1280639 14285565 ~ 14286016 (+) True G33153
TU41531 lncRNA upstream 1405952 14152802 ~ 14160703 (+) True G33141
TU41465 lncRNA upstream 1928484 13633702 ~ 13638171 (+) True G33093
TU41845 lncRNA downstream 347555 15928569 ~ 15931201 (+) True G33392
TU41859 lncRNA downstream 421782 16002796 ~ 16003201 (+) True G33404
TU41864 lncRNA downstream 519944 16100958 ~ 16101159 (+) True G33408
TU41880 lncRNA downstream 785100 16366114 ~ 16366342 (+) True G33422
TU41906 lncRNA downstream 907857 16488871 ~ 16491053 (+) True G33444
AMCG00019347 mRNA upstream 36744 15520426 ~ 15529911 (+) True AMCG00019347
AMCG00019342 mRNA upstream 86919 15436315 ~ 15479736 (+) True AMCG00019342
AMCG00019336 mRNA upstream 311258 15240522 ~ 15255397 (+) True AMCG00019336
AMCG00019337 mRNA upstream 337879 15219221 ~ 15228776 (+) True AMCG00019337
AMCG00019323 mRNA upstream 621428 14938940 ~ 14945227 (+) True AMCG00019323
AMCG00019345 mRNA downstream 24853 15605867 ~ 15625895 (+) False AMCG00019345
AMCG00019346 mRNA downstream 100890 15681904 ~ 15688849 (+) True AMCG00019346
AMCG00019350 mRNA downstream 112028 15693042 ~ 15705080 (+) True AMCG00019350
AMCG00019353 mRNA downstream 348861 15929875 ~ 16130440 (+) True AMCG00019353
AMCG00019354 mRNA downstream 659368 16240382 ~ 16266099 (+) True AMCG00019354
TU41707 other upstream 396814 15164348 ~ 15169841 (+) True G33283
TU41554 other upstream 1079949 14439253 ~ 14486706 (+) True G33159
TU40734 other upstream 5157158 10404639 ~ 10409497 (+) True G32539
TU40438 other upstream 5937993 9369898 ~ 9628662 (+) True G32293
TU40432 other upstream 6217836 9329479 ~ 9348819 (+) True AMCG00019215
TU41862 other downstream 462928 16043942 ~ 16081943 (+) True G33406
TU42780 other downstream 5026460 20607474 ~ 20610889 (+) False G34170
TU42783 other downstream 5026460 20607474 ~ 20610889 (+) True G34170
TU42785 other downstream 5026460 20607474 ~ 20610889 (+) False G34170
TU43058 other downstream 7034609 22615623 ~ 22625205 (+) False AMCG00019475

Expression Profile