RNA id: AMCG00019349


Basic Information

Item Value
RNA id AMCG00019349
length 1062
RNA type mRNA
GC content 0.64
exon number 2
gene id AMCG00019349
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 15628489 ~ 15630001 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCAGCTGCAGGCGCCGCGCTGGATTGATATTGCCCGCTTTCTGTTCGGCATCCCCGCTGCACAGGTGTCTGACCTCCGGGTGCGAGTTGTGAAGCGACACAGCCAGCCCCCGCCTCACCGAAGCGCGGCTCCCGACCCGGGCGAGCCGGCTGCCATTCGCGCAGAGGAGCAGACCACAACTACGTTCATGAGTGTGATATACAGCCTGGACTCCCAGTGCGTCTCTCCACCATGCGCTATGAAGTGGGCCATGGAGCCGGCCAATTTCTACGAGAGTAAGCCAAGCTCGGTCCAGGGCTCCTGCAAGCCCGGCCGAGGCGCTGGCACCGGCATGGGCGAGGAGAGCAGCCTGGCAGAGCTCAGCACCGCCCAGGCCATGTACGACGACGAGAGCGCCATCGACTTCAGCTCCTACATCGACTCCATGCCCTCCGTGCCCAACCTGGAGCTGTACAACGACGAGCTGTTCGCGGACCTGTTCAACAGCAGCGTGAAGCAGGAGAAGACGGACTTCAACTACCTGCACCTCCAGCAGGGCTCCAGCGCCGCCGCGGCCCCTGCCAGCCACCCGAAGGACTTCGCCGCCAAGCAGGACGGCAGGCGGGTCAAGGGGGTGTTCAGCGCCCCCCTCAAGCAGGAGTCGGACTGGAGTGACAGCGACATgtcctcctccctgccctcgCAGATCGAGACCTGCGCACAGACGGCGGTGAGTCTGCACACCGGCCAGCCCACCCCGCCCACCACCCCGGAGCCCTCCTCGGCGCACCCCGGCTCCAGGAAGAGCGGCCGGGACAAGGGCAAGAAGCATGTGGACCGGTACAGCCCCGAGTACCGCCAGCGCCGGGAGAGGAATAACATCGCGGTGCGGAAGAGCAGGGACAAGGCGAAGCAGCGCAACTTGGAAATGCAGCAAAAGATGATTGAACTCGGGGCGGAGAACGaccggttgcataaaactatcgAGCAGCTCAGCCGGGAGCTCGCCAGCCTCAGAAACTTCTTCAAGCAGCTCCCCAACTCCCCTTTCCTGGGATCCAACAGCTCCGACTGCCGGTAA

Function

GO: NA

KEGG:

id description
K10050 CEBPD; CCAAT/enhancer binding protein (C/EBP), delta

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU41716 lncRNA downstream 372466 15254032 ~ 15256023 (-) True G33291
TU41710 lncRNA downstream 443952 15182780 ~ 15184537 (-) True G33285
TU41706 lncRNA downstream 466522 15161712 ~ 15161967 (-) True G33282
TU41689 lncRNA downstream 566138 15061774 ~ 15062351 (-) True G33268
TU41618 lncRNA downstream 910256 14714791 ~ 14718233 (-) True G33206
TU41846 lncRNA upstream 228176 15858177 ~ 15931208 (-) False G33393
TU41848 lncRNA upstream 298444 15928445 ~ 15931208 (-) True G33393
TU41877 lncRNA upstream 642066 16272067 ~ 16311866 (-) True G33419
TU41928 lncRNA upstream 988301 16618302 ~ 16618691 (-) True G33461
TU42002 lncRNA upstream 1414017 17044018 ~ 17044239 (-) True G33531
AMCG00019343 mRNA downstream 77461 15533235 ~ 15551028 (-) True AMCG00019343
AMCG00019340 mRNA downstream 268421 15359700 ~ 15360068 (-) True AMCG00019340
AMCG00019341 mRNA downstream 269826 15358008 ~ 15358663 (-) True AMCG00019341
AMCG00019338 mRNA downstream 285215 15337671 ~ 15343274 (-) True AMCG00019338
AMCG00019339 mRNA downstream 314372 15305923 ~ 15314117 (-) True AMCG00019339
AMCG00019348 mRNA upstream 2481 15632482 ~ 15681330 (-) True AMCG00019348
AMCG00019351 mRNA upstream 233786 15863787 ~ 15864856 (-) True AMCG00019351
AMCG00019352 mRNA upstream 358162 15988163 ~ 15988928 (-) True AMCG00019352
AMCG00019356 mRNA upstream 760376 16390377 ~ 16421282 (-) True AMCG00019356
AMCG00019355 mRNA upstream 824739 16454740 ~ 16474345 (-) True AMCG00019355
TU41680 other downstream 636493 14951842 ~ 14991996 (-) True G33259
TU41560 other downstream 1070199 14491891 ~ 14558290 (-) False G33163
TU41559 other downstream 1136271 14491891 ~ 14492218 (-) True G33163
TU41485 other downstream 1963259 13662116 ~ 13665230 (-) True G33106
TU39603 other downstream 10692493 4932838 ~ 4935996 (-) False AMCG00019129
TU41832 other upstream 62481 15692482 ~ 15721452 (-) True G33381
TU42573 other upstream 3812394 19442395 ~ 19448573 (-) True AMCG00019419
TU42823 other upstream 5113529 20743530 ~ 20765496 (-) True AMCG00019446
TU43148 other upstream 7517860 23147861 ~ 23199608 (-) True G34470
TU43838 other upstream 13887995 29517996 ~ 29521984 (-) True G35067

Expression Profile