RNA id: AMCG00019350


Basic Information

Item Value
RNA id AMCG00019350
length 2984
RNA type mRNA
GC content 0.36
exon number 4
gene id AMCG00019350
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 15693042 ~ 15705080 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGCAAAACGTTCTGGGAAACGAACGACCTCAGAAACAAAATGTCCTTCGAGCCGGATTCGAACCAGCGACCTAAGGATGGCCGAGATGAACCGCTACAGTCCTCCGCTCTACCAACTGAGCTATCGAAGGGATGGGAACGCAGCCCCGCACAGGAAATCCGTGCTCGCTCTGAAGATAAGgacttttattttctatatttttaattgtctgcAGGTCACATTTTTACCCAAACAGTATTTGGCAGAGTCTATTTCAGTCATAACTCGATAATATAActtaaattgtactttataATAACAAATCTGGCTTGACTGTAGCAAACTGAGAGTGGAAATATATAGTTGAGAAAACAATATAGATACATCTGCAATGTACATTGAGATACATATtccacattatttaatttaaataatttgtgttctatgaatacaacataaaataaaaacgtttcATTGCGTGCTACTGTAGCTCATTCATAAGACAGATGTTTTCCGTATCGAAACCACAAAATATCCTGGCGCTCCGGGCAGCGGCGCGTCGGTGCAGTGATGACGCGCAGGCCAGCTGTGATGTCACGGATTTGTGTGCTTCTGGATTCGGCTGGACAAGATGGCGGCCTCCACAGGAGTTAAAGTTCCTCGTAACTTCCGCTTGTTGGAAGAGCTTGAAGAAGGACAGAAAGGAGTGGGTGATGGTACTGTCAGCTGGGGCCTTGAAGATGATGAAGACATGACGCTTACAAGATGGACAGGCATGATCATTGGACCAGCACGAACTAACTATGAAAACAGAATATACAGCCTCAAAGTAGAGTGTGGACCTCAATATCCAGAATTACCACCAACTGTTAGATTTGTAACAAAAATTAGTATGAATGGAATAAATAATTCCAATGGGACGGTGGATTCTCGTAGCATACCAATTCTAGCTAAATGGCAAAATTCCTATAGCATTAAGGTTGTACTTCAAGAGCTACGGCGCCTAATGATGGCCAAAGAGAATTTGAAGCTTGCGCAGCCGCCAGAAGGACAGACCTACAGCAATTAATTCTAATAGATTCTTATGACCCTCTGTCTTAAACCTTATTCTCCTAAAATGTCTTGTAAATTTTCACGATGCTTACCACCCACACATAAAGAATTACATCTGCAGGTGCAGGATTGGGACATTTCTGTTagttaagtaaaaacaaaatgtttgctgATTATGTGAggcactgtttaaaataaaaaaaggaaaaaagaaaaaatagaactgcacaaatttatttttctttattcacGACACTGTTGTTTTGGATCATAAGCTTGAAGTATGTGAAACCTTTAAAGTTGGGCTTTTTATTTGGAGAGAAGCATGACACAAAAGGTCAGGTGATTGCAGAGCTATATATATTAAGTTAAAATTACTGGTCTCAATTAGAAACAATACAATAGGATGTGTATGTAATGGCATGCTTTAAAAACCCATCTCaatagtaaaagaaaaaagctgcaAAAGATTAAGTTCTATGTTAGTGAAATTAGCAGGTACACTGAAATTTGTTGCAAATTATGTTCATGAATATTAGTTGAAGTGTGGATGTAGACTACTAGTAGTGTCACAGAGTTTTAAGGGTTGTTTTTGATACCTGTATTTATGACAACAAGATTGAATTCTGTAAAGCAGCTCTTATGTGTGACATGTAACAGACATTGCAGATATTTGTTTACAGTCTTTGTTCTTCGAAGTCAAAACCTTGCATCTAACTTTTAGTGAAGATAAATAAAGACTAGGTGTatggaaatgtgattttctgAGATTAAAATCAGTCTCTGAGATTGAAGTATGGACTTCCTTTTTTCACTTAACATACAGGATTaaggagtttgttttaatttagaaaaagaGAGGCTggcaattatttgtattgcatgaCACATGGTGGATTAGGCTATGACAAATTCCAGAGAAACATAATTAAGAGCTATAGTCAGGATATATTTGTTGcccttttgtttctgtttgctgCTTTGAAGACAGTGGTGACAAGCATACAGTacacatttagatttagatttacaAATTTCACTTCAGAAGTTGGTGGTCAGTCAGAAGCATTTTCATTAGTGTGGAACAAATTTTAAGAACTGggatgtttttagtttttttttttctcccccaattaagacatttgttttgcattttgatgaagctaatgttttcttaaaatagaaGTTATAACAATTGTCTAGCAACAGCATGCAatttcttttcaatttcaattactttttttttgtaagaccTTCAGCATTGTCTGTTCAGTATAAGCTAATAAACATATTGAACTAATTTATGCATATTATACAAAGTCCACAATGGGATTTCCCCCCTCCCGTGTGTTATATTAGATAACTGTTTATTGGATcacatattgtttaaaatgcatgtgaTTCTGAAAGTTACAAGGTTACATTCTGAAAAGGtgactgctgtttatttttcatggttAGTGAATTTCTAACCATTGAGGTGCCAAGAATCCTTAATAAGTAGTTGCTATTTCAACATTTTAGGGAGCATTCTGTTGTACCTGCAGCCATTTACAATGTAGTTAatgttggtttttttttggaTGGTCTAGAGTCTACTgggctttgaaatgtttaacagaaataaagtCATGCACTGCATAAAGAGACAGTAGGTGGGAGTTGATTTAATGATTTACATTTGAGTGTTGATGTTGGGAGAATCACTCCAGTCCATTCTTCACTGGGAAAGAATATGGAAGCTTAATTTCCTAAATTTACTTTAAAGGTaaattttttgttggtttgagtttattatttttatttttaatgctggGCTCACTAATGTTTGTTTCTAGAACTAAACAATTTTTCTGTGTAGTGTATCATTATCTTGAATTTGGGGCCAACTGACTTTCAAATAAACTGTTGAAGATGTTTCCCCAACATTTATCAGGGctctgaatttaaaa

Function

GO:

id name namespace
GO:0070534 protein K63-linked ubiquitination biological_process
GO:0016881 acid-amino acid ligase activity molecular_function

KEGG:

id description
K10704 UBE2V; ubiquitin-conjugating enzyme E2 variant

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU41764 lncRNA upstream 66087 15554819 ~ 15626955 (+) True AMCG00019345
TU41737 lncRNA upstream 159846 15484078 ~ 15533196 (+) True G33307
TU41557 lncRNA upstream 1200836 14491892 ~ 14492206 (+) True G33161
TU41546 lncRNA upstream 1407026 14285565 ~ 14286016 (+) True G33153
TU41531 lncRNA upstream 1532339 14152802 ~ 14160703 (+) True G33141
TU41845 lncRNA downstream 223489 15928569 ~ 15931201 (+) True G33392
TU41859 lncRNA downstream 297716 16002796 ~ 16003201 (+) True G33404
TU41864 lncRNA downstream 395878 16100958 ~ 16101159 (+) True G33408
TU41880 lncRNA downstream 661034 16366114 ~ 16366342 (+) True G33422
TU41906 lncRNA downstream 783791 16488871 ~ 16491053 (+) True G33444
AMCG00019346 mRNA upstream 4193 15681904 ~ 15688849 (+) True AMCG00019346
AMCG00019345 mRNA upstream 67147 15605867 ~ 15625895 (+) False AMCG00019345
AMCG00019344 mRNA upstream 112028 15566655 ~ 15581014 (+) True AMCG00019344
AMCG00019347 mRNA upstream 163131 15520426 ~ 15529911 (+) True AMCG00019347
AMCG00019342 mRNA upstream 213306 15436315 ~ 15479736 (+) True AMCG00019342
AMCG00019353 mRNA downstream 224795 15929875 ~ 16130440 (+) True AMCG00019353
AMCG00019354 mRNA downstream 535302 16240382 ~ 16266099 (+) True AMCG00019354
AMCG00019365 mRNA downstream 788387 16493467 ~ 16856282 (+) True AMCG00019365
AMCG00019361 mRNA downstream 1339016 17044096 ~ 17050175 (+) True AMCG00019361
AMCG00019368 mRNA downstream 1370590 17075670 ~ 17078562 (+) True AMCG00019368
TU41707 other upstream 523201 15164348 ~ 15169841 (+) True G33283
TU41554 other upstream 1206336 14439253 ~ 14486706 (+) True G33159
TU40734 other upstream 5283545 10404639 ~ 10409497 (+) True G32539
TU40438 other upstream 6064380 9369898 ~ 9628662 (+) True G32293
TU40432 other upstream 6344223 9329479 ~ 9348819 (+) True AMCG00019215
TU41862 other downstream 338862 16043942 ~ 16081943 (+) True G33406
TU42780 other downstream 4902394 20607474 ~ 20610889 (+) False G34170
TU42783 other downstream 4902394 20607474 ~ 20610889 (+) True G34170
TU42785 other downstream 4902394 20607474 ~ 20610889 (+) False G34170
TU43058 other downstream 6910543 22615623 ~ 22625205 (+) False AMCG00019475

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00047199 False 27892 lncRNA 0.34 1 NC_007135.7 24800776 ~ 24828667 (-)
grasscarp (Ctenopharyngodon idella) CI01000082_04604289_04607362.mRNA True 879 mRNA 0.39 3 CI01000082 4603832 ~ 4607362 (-)