RNA id: AMCG00019355


Basic Information

Item Value
RNA id AMCG00019355
length 3630
RNA type mRNA
GC content 0.37
exon number 6
gene id AMCG00019355
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 16454740 ~ 16474345 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACAGATTCTTACCCCGACTGAACATATAGAAAGAGTGCCTATGGTAAAGAGATGCAGTCTCCGTGTCAGACTCTGTCCCATGGCTATCTCTAATCAGAAAATTGTCAGTAGACGAACGGGGCTGGATAAAGCCGAGTATTCACTGTGCTGATACTTTCTCCATACCTGAACAGTCAAAAAGGAATTGTAAGGGAACATTTGTTATTGAAACGATACCAAAAAAGACACGCACTTAATCAGACTTGCACTTGCTGTGATGATCTGATACACTGCTTACAGCACACCTACCTGTCACTGAGGCGGCCTCTCCATGTTGGACAGCTGCTTGTTGCTGTGAAAGAGAAGCAGAAGACAAGTTGCCGAGAGTTTGCACATCTTGAGTTCTCTCTGCTTCACCGGCCATGGGAGGAGCTGTGAGTGCTGGAGAGGATAATGATGACTTGATTGACAACCTGAAGGAGGCTCAGTACATCCGCACTGAAAGGGTGGAGCAAGCCTTTCGAGCCATTGACCGGGGAGATTACTACCTAGAGGGTTACAGGGATAATGCCTACAAGGATTTGGCCTGGAAACATGGAAATATTCATTTGTCAGCACCATGCATTTATTCTGAAGTGATGGAGGCATTGAAACTTCAACAAGGATTGTCCTTTCTGAACCTTGGAAGTGGAACAGGTTACTTGAGTACAATGGTGGGCTTGATAATAGgTCCGTTTGGGGTTAATCATGGAGTTGAACTTCATACTGATGTGGTAGAATATGCCAAGGAAAAACTGgatgattttattaaaaatagtgATAGCTTTGATAAGTTCGAGTTCTGTGAACCCAACTTTGTAGTTGGGAATTGCTTAGAAATTTCTTCAGACAGCCATCAATATGACCGGATCTACTGTGGTGCGGGAGTACAGAAGGATCATGAGAATTACATGAAAATCTTGTTGAAAGTTGGAGGGATTCTGGTGATGCCGATCGAGGATCAGCTGACTCAGATAATAAGGACAGGTCAAAGCACATGGGAAAGCAAAAATATCCTTGCAGTGTCATTTGCTCCTCTTGTTCAGCCAAACAGAACAGATGGAAACAAGCCAGACACTGTAAAGCTGCCCCCAGTGTCTGTAAGGAGTTTACAGGACTTGTCCCGCATCTACATTCGCCGCACACTTAGAAACTTCATTAACGAGGAGGTGCAGGCCAAAGGCACTCCGCAGAAAGTACCCCAGAAGCGCAAAAGAAGGCGTTGCCGCAGGCGTCGGATCAATACATATGTTTTCGTGGGTAATCAGCTGATCCCACAACCTGTAGAGAGTGAGGAAGATGAAAGAATGGAGGAAGACAATAAAGAAGAGGAAGACAAAGATAGTACAGAGAGCCTGACGCAGGACGAACCTCCTCCAAATTTGCTCCGAGAAAAAATCATGACTTTGCCTTTACCTGAATCATTGAAATCATACTTGACATACtatagagaaaaataattaactgcACTGACAATTATTCTGAAAACCTGTAACACCTACTGAGACatttttctttacttatttCTCAAAAATGTAGCATTGCTCAGAGTTTCCTTGTAGGTGAAGCTGTTTAAGAGGATAGGTTgccacaaattaaataattgtcaaTAATATGCAGATTGTTATGACTGGATTGATTTATAAAGATTTGGAAAACTTTATCCTTAGTGATGAATATGAGAAATAACAGCTATTTCAGTATTGTTTGAtcaaaacaaagtatttaaaatctAAGTCTTTTCGACATTGGatttcttttacatttatattgcaaaaaataaaaaataaaaaatatatgaaattctGCTGATTTAAAGCAAATACTACTAGTTACAAACAAGCTTCAACGTACAGTATGTACACAAATGGGTTCAAAACTAAATTGTAGATGCTTTAAACAGTAATTTACTGGAGATTTCCAAAgcttatattgaaaaaaaaaagtatgcagATATTTTGCTATTATGAAATAAGCAATTtagaatatatacattatttcaattatatgaTTTTCCACCTTTGAGGTATATGTAGATTTGTTTTGGCTATTGAGCAAATGCActttatttcattaaactaGGTTATAAGGGCAGATATGTCTGCTTATGAATGAATCTTCTGAACAATATTTTGGAGTAATGGCAGCAAAATTTAAACTTTATTCCCTTTGACCCTATTTTATAAATTTGGTAACTGTGGAAATCTGGGACCTTCATAAAGACATTGAAGTTGGACATACTTTCCTGAATTCAATTTTGTAATAGTTTTTACTCTATCTTTGTGCTCGATGGAGTTTACATGTCAGTTGCACTTTCcccaaggtttttttttttctttttttttttaaataaacactttgcCGATTGGCAGAGTATCGGGAAAGACAATGACGGGTATGTTAtgataatatttagttttatgttAATGTATAGAAAAATGGGTCTTTGATTTGCTGAGGTGATCATATGAATTGCAGGGATGCTTTTACATTCCTTAAGTGCTTAAAAAAAGGACAGCATGGGAGTAAGCATATGACCATGTTTTATCCGTATATATTCAAATTTTTTGTCAAACCACATATAGGTACATGGTAATGCAGTGCTCCTTGATCACAACCAGCATTTTCTTGTGGAATTCACCTGTTATTTTCCCATATCTTCAAATGGAATTTTACCAGTATGTTTtactatttttgtattcatgtgttattatACATGGACAATTTTAATCTGCAAGGGAAGCAGGTAATATAAAAAGAAGCATGTTGGTAGGCCATGGGAACTTTAACATTGATAATTTCCTTTCCAAATGAATGTTCTCCACCACAGGGGGTTATGGGAGCTAGAGATTTGTTAAGTTTTCTGTCctatgttattatttgtttggaggggggcgggggggactTCATCTATCACCTCCCACGCTCTTTCATGCTGAAAAGtcatttcaattgaaatataGTAACCATACATTACATGGATGGGATACATTAActtatttaaagacaaaaaaacaaattaacttaatttgcTTTCCATATCCTTCCTATGTCAATGAGGAATACAAGAATCAAGGCATTTGCCTAAGAGACTACAAGTGGGTACACTGTGGTAATTGATACAAATGGTGGTAGACCTCTTTGCTTGATAgaaacacaaaactacaagtCATATGTACACCtctttttgaaagaaaaaatgcctTCCCTGGGATGATGAACATTTTTGTCAGTGGACGCATACTTGATCTTTAGCATGTAAACACCATTGATAAAGTTTTACTATTgaagattattttctttcttttcttttttgtacagAAAGCTTAGACATAACAATTTCTGCACTCTTTGTCTTTTGGTCATTGATAGGTACAACAAGCAATAGATGTATTTTCATAGgtacatactgtacatgtgtAACTTTTTTGCAtcattgaaatataaaactatagTCTGGTGTTCTTTTGTGTTGAGATTGTCgattcctttaaaatgtttcaagtTTATAGATCAATTCCTACACAGTTTccttggttaaaaaaaaaaaaagcaaataacaaAAGCTTAATCTTTCTGCATATTATAACTggggaacatttttaaataaaa

Function

GO:

id name namespace
GO:0006479 protein methylation biological_process
GO:0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU41877 lncRNA downstream 142874 16272067 ~ 16311866 (-) True G33419
TU41846 lncRNA downstream 523532 15858177 ~ 15931208 (-) False G33393
TU41848 lncRNA downstream 523532 15928445 ~ 15931208 (-) True G33393
TU41716 lncRNA downstream 1198717 15254032 ~ 15256023 (-) True G33291
TU41710 lncRNA downstream 1270203 15182780 ~ 15184537 (-) True G33285
TU41928 lncRNA upstream 143957 16618302 ~ 16618691 (-) True G33461
TU42002 lncRNA upstream 569673 17044018 ~ 17044239 (-) True G33531
TU42003 lncRNA upstream 575169 17049514 ~ 17049746 (-) True G33532
TU42004 lncRNA upstream 575652 17049997 ~ 17054332 (-) True G33533
TU42060 lncRNA upstream 829113 17303458 ~ 17303696 (-) True G33579
AMCG00019356 mRNA downstream 33458 16390377 ~ 16421282 (-) True AMCG00019356
AMCG00019352 mRNA downstream 465812 15988163 ~ 15988928 (-) True AMCG00019352
AMCG00019351 mRNA downstream 589884 15863787 ~ 15864856 (-) True AMCG00019351
AMCG00019348 mRNA downstream 773410 15632482 ~ 15681330 (-) True AMCG00019348
AMCG00019349 mRNA downstream 824739 15628489 ~ 15630001 (-) True AMCG00019349
AMCG00019357 mRNA upstream 33293 16507638 ~ 16552225 (-) True AMCG00019357
AMCG00019358 mRNA upstream 242020 16716365 ~ 16760441 (-) True AMCG00019358
AMCG00019359 mRNA upstream 317550 16791895 ~ 16843567 (-) True AMCG00019359
AMCG00019360 mRNA upstream 417393 16891738 ~ 16899067 (-) True AMCG00019360
AMCG00019366 mRNA upstream 481545 16955890 ~ 16976970 (-) True AMCG00019366
TU41832 other downstream 733288 15692482 ~ 15721452 (-) True G33381
TU41680 other downstream 1462744 14951842 ~ 14991996 (-) True G33259
TU41560 other downstream 1896450 14491891 ~ 14558290 (-) False G33163
TU41559 other downstream 1962522 14491891 ~ 14492218 (-) True G33163
TU41485 other downstream 2789510 13662116 ~ 13665230 (-) True G33106
TU42573 other upstream 2968050 19442395 ~ 19448573 (-) True AMCG00019419
TU42823 other upstream 4269185 20743530 ~ 20765496 (-) True AMCG00019446
TU43148 other upstream 6673516 23147861 ~ 23199608 (-) True G34470
TU43838 other upstream 13043651 29517996 ~ 29521984 (-) True G35067
TU43847 other upstream 13070886 29545231 ~ 29550162 (-) False AMCG00019556

Expression Profile