RNA id: AMCG00019359


Basic Information

Item Value
RNA id AMCG00019359
length 4653
RNA type mRNA
GC content 0.43
exon number 21
gene id AMCG00019359
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 16791895 ~ 16843567 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACGCTAGCGACATTGCCCGGATGCGCTGAGTGCCCGGATGGAGAGTGCACCGCGCTGCGCAGTGAcgacaataacaaaacacagcagcagaCACAGAAACGGGACCTTAAACATGCAATTCAGGTGAAATACAAGATTGCAACTCAACATCAAGTTCTGGTTGTCAATGGAGGGGAGTGCATGGTTGCAGATAGGCGTGTCTGCAGTTACAGTGCCGGCACAgATACAAATCCCATTTTTCTCTTCAACAAAGAGATGATTTTGTGTGACCGTCCTCCAACAATacctaaaacaacattttcagttgaaaatgAGATGGAACTAAAAGTGGAAGAGTCCCTCATGATGCCAGCTGTTTTTCACACTGTTGCCTCACGAACACAACTTGCTGTgGAAATGTTTGAAGTTGCCAAGAAACTTTGCTCTTTTTGTGAACGACTAGTTCATGATGAGCACCTTCAACACCAAGGGTGGGCTGCTATAATGGCAAATCTGGATGACTGTACTCTGTCTTACCAGaagctgctttttaaatttgaaactgCTTATGTAAATTATCAACAGAGCATTGAGGACATCAAACAGAAGCTTACCCACCTAGGTACAGCCGTGTCTGTTATGGCTAAGATTCCGCTGCTGGAGTGCTTGACCCGCCACAGCTACAGAGAGAGCTTGGACAGATCAAGCTCACCTGCAGAGAAGGAAGGGACTGGAGAAGAAACTGAGGAGGAAAAATCTACTGATTCGGTGCTATGCCCTGGAGGACCCAGAACTAGCAATAAATCATCAGCGTCGTTTTCCATATCGTTAGAGAATCCGTCTCAGGACAGTGTAGCGCAAGATAACAGCGAGGCAGCCAAGAGCAGCAGCCCAAGCGCTGCACCGCAAGACACCGACTCCCATGACAAGAGTGACCAGCCTTTATTCAACGTCTCCTTGTTAGATTGGATAAATGTACAAGACAGACCAAATGATGTGGAGTCTGTTGTGAGAAAATGCTTCGACTCCATCAACAGACTTGATCCAAGAATCATTCAACCCTTTTTGGCAGAATGTCGGGATACTATTGCCAAGCTGGATAATCAGAACATGAAGGCCATCAAAGGTCTTGAGGACAGACTGTATGCTCTGGACCAGATGATTGCAAGCTGTAAAAAGTTGGTAAATGAACAGAAGGAACTTGCTCAgGGATTTTTAGCCAACCAGAAGCGAGCTGAAAATCTGAAGGATACTTCTGTGTTGCCTGACCTGTGTCTGAGTCATGCCAACCAACTGATGATAATGTTGACCAATCACAGGAAACTGTTGGACATTAAACAGAAATGCACCACAGCAAAACAAGAGCTTGCAAACAATCTGCAAGTTAGACTGAAGTGGTGCTGCTATGTGATGCTTCATGCAGATCAGGATGGGGAAAAGCTGCAGGCCTTACTACGCCTCTTAACAGAACTGTTTGAGAGAGTCCGGGTGGTCGAGGCCCTGAGCACTGTCCCCCAGATGTATTGCTTGGCTGTTGTGGAGGTTGTAAGGCGGAAGATTTTTATAAAACACTACAGAGAGaCTCGTAAGCCTCGTAAATTTGACTTTGAGCTTCCTGATATATCCTTATGTGATCTGCAATTTTTGAAGTCTTGTTGTCCTCCAGAGGTTCAACCTTTCCTCagGGTTCCAACACTGTGTGACTTTGAGCCTTTACACCAACATGTACAGATCCTTCACCAACTGGTGAAAGCTGCTCAGAGTGTGGATGAAATGTCTCAAACCATTACTGACTTACTGAGTGAGCAAAAGGCATCTACTAGTCAGACAGCTCAAAGATCCACTACAGTACCCAGGTCTGAAAGCACAACAGGAACTACTTCTACCTCTTCCAAAGCCCCGTCATCACTCAGTCTTCAGGGTCCCCTCTGTCAGCCTCTGAGTATCCCTGGCCCCCTAGAGGAATTATCTCCAGACAGCATTGATGCCCATACATTTGACTTTGAGACTATCGGGCATCCAAATATGGATCCAGTCTCAAAACAGGAATCTCTAGACTTGGACTCTTTAGCAGAGAGCCCGGAATCAGATTTCATGTCCGCAGTTAATGAGTTTGTTATTGAAGAGAACTTGACTTCCCCCAGTGCTATCAGTGATCCAACGAGTCCAGAAATGATGGTGGAATCTCTCTATTCGTCTGTTATTAATGCAATTGATAGCAAGCGCATTCAGGATACAACAACATTAGAAAAAGAGAACTCAAAAGTTGCAACGCTGAAAGtatgtattgaaaaatacagATCAGTTGCAGAGGAATCccagtgtaatttaaaaagcatcaaGGAGGATCTGTGTCATTTCCGAGGCCTGGTTCAGAAGGAGCAGCGAGATTTCTGTTTCGCTTTAAAATCTGTGTCAGTAGAAGTACGAAACATTATAGACAATATTAAGTACTCCCATGAAGAGGACTTAAAAGGAAGGCATCAGCATGAACTACAGgttctcaaaataaattatgagaAAGACATAGACATTCTGAAAGGAGAGTCCGAAGTTAACCAGAATGTCTTAAAAGACCTGAAGCAAACCTTGTTGGAACTTGAAGACATTGTACGGACtaaggaaaatgaaatattcCTGTTAAGAAGTGAAAAGGAAAGATTTGCAGAATCTGAAAGTAGTCAAAAACAACATCTATGtgatttggagaaaaaaattgGAGagcaaaatactgaaataaaagccCTGTTACAATCCAAAGACACACTAGAAGATCAATTGGAGCATCTTCACTTTGAGATTGAACGCAGTCAGCAGAAAATGAAGCTTGAACTTGAGATCCTAGAACAGTCTCACCTCAAGGAGCTAGAGGAGAAGTTACAGGTAAAGCACGCCAAAGAACTAGAAGTATTGAAAAATGAACACCAAGTACAACGTGATGTGTTAGTTAATGAACACCTAGCGAAGCTGGATGAACTTCTAGGACTGCATGCCTCAGAGACGAAAGCACAGGAAAGTCATCTGAAGGAACTGGAATTTCGAGTTTCCGAGCTGTTGGATATTCGGTGTAAGTTAGAAGTTGAAATGGCACTCAAAGAAGCTGAGACGGAAGACATTAAAAGGCTGTATGAAGAAACCAAATCTCAACAAGAGGAGACCGTGAAGTCCAGGATCGAAAATGAAACTGCAGCTTTGAGGAAAGAGATCTGTGATCTAAAACCGCAACTTCAGGCTAAGAAGGAAGAGTACGAGGTAGGTATTGCAGAGTTGACAACACTGATGAGAACTGAAAAAGATAATTGTATCTCTGAGTTAGTGGACAGACATAGAGAAGAGACTGCTTTACTCCACAATGAACTTTCAGCCATGCAACAAAAAGCCCTTGATGTTGAAAAAATCCATGGGGAACAAGTACTACAGCTGCAAAAGGATCTGGATAATCAACTTGCAGCTCACAAAAAGGACAtagaagaaaaggagagagtgTTCCAGGAGCAACAACAGGATTATAAAACATGTATCTGTAATCTACAAGCAGAAAACGCGCTTCTTTCAAACAATCTAGCCCAGGAGAAACAGAGTGTTATTCAGAGTTTAgataaagaaaagcaagaagCAGTGAAAGCTGCCTTATCAGATGCCTTTAAAGATTTTGAACACCAAAAGGAGGCTATTGAAGAAAGACTTCTAGAAAAAGTGAAACAGCTTGAAAATGAGCTGAAAGAAAGACACTCTCAAGGGCAATCTGAGGTACAGGTAGAAAAACCTCTAAAAGCTAATGCAGATCTCCAGGAAAGGCTTCAAGATGAAAGGGCCAGTTTACTGGTACAACTTGAAGATTTGGAGAAGaggaaaaatgaagaaatgcaGAACCTGAAAACATCACTGATTGCAGAGCAACAGACAAACTTCAACACAGTTCTGAcaagagaaaaaatgaaaaaggaacaaataattaatgacTTAACTGACAAGCTGAACAATATTTTACAGCAACAAGAACGGGACAAAGaTCTCATTAAAACTCTTTCCGAAGACCGAGCAAACATgcttcaagaaaagaaaaaacttgaGGAGGAACTGAACCGGATTCGCAGCAGCACCTTAGTTTCCTCTGCATTCTTCGCTGCTAATCCTGCGGTCGCAGACGTTACAGGAGCATGCTGCGCTGAGCCTCCCGTTGACCCGGACAGGCTGGCTTCTGTCGCGGCCATCGGAGAAGATGGGAGAATAGACTCCGCCGTTGACGCCAGCATGATGGCTGTTCATGAAAACATCCCAATGTtatctgaagaaaaacaacGGATCCTTTTATTAGAAAGgactttACAcatgaaagaagaagaaaataagcgCCTCAATCAAAGACTGATGTCTCAGAGCATGTCTTCGGTGTCCTCACGGCATTCTGAAAAAATAGCTATAAGAGATTTTCAGGTTGGGGATTTGGTTCTTATTATCTTGGATGAAAGACATGATAATTATGTACTGTTTACTGTGGGGCCGACCTTATACTTCCTCCATTCAGAGTCTCTTACTGCATTGGATCTCAAACCAGcaaCAGGGTCTCCAAGACGACCATGGGTTCTTGGAAAAGTGATGGAGAAGGAATATTGTCAGGCAAAGAAGTTCTACCGAGTGAAGGCGGTGCCCTGGAACAAGAAAGTATAA

Function

GO: NA

KEGG:

id description
K17589 RB1CC1; RB1-inducible coiled-coil protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU41928 lncRNA downstream 173204 16618302 ~ 16618691 (-) True G33461
TU41877 lncRNA downstream 480029 16272067 ~ 16311866 (-) True G33419
TU41846 lncRNA downstream 860687 15858177 ~ 15931208 (-) False G33393
TU41848 lncRNA downstream 860687 15928445 ~ 15931208 (-) True G33393
TU41716 lncRNA downstream 1535872 15254032 ~ 15256023 (-) True G33291
TU42002 lncRNA upstream 200451 17044018 ~ 17044239 (-) True G33531
TU42003 lncRNA upstream 205947 17049514 ~ 17049746 (-) True G33532
TU42004 lncRNA upstream 206430 17049997 ~ 17054332 (-) True G33533
TU42060 lncRNA upstream 459891 17303458 ~ 17303696 (-) True G33579
TU42065 lncRNA upstream 469772 17313339 ~ 17315430 (-) True G33584
AMCG00019358 mRNA downstream 31454 16716365 ~ 16760441 (-) True AMCG00019358
AMCG00019357 mRNA downstream 239670 16507638 ~ 16552225 (-) True AMCG00019357
AMCG00019355 mRNA downstream 317550 16454740 ~ 16474345 (-) True AMCG00019355
AMCG00019356 mRNA downstream 370613 16390377 ~ 16421282 (-) True AMCG00019356
AMCG00019352 mRNA downstream 802967 15988163 ~ 15988928 (-) True AMCG00019352
AMCG00019360 mRNA upstream 48171 16891738 ~ 16899067 (-) True AMCG00019360
AMCG00019366 mRNA upstream 112323 16955890 ~ 16976970 (-) True AMCG00019366
AMCG00019363 mRNA upstream 144074 16987641 ~ 17006138 (-) True AMCG00019363
AMCG00019364 mRNA upstream 212405 17055972 ~ 17064681 (-) True AMCG00019364
AMCG00019362 mRNA upstream 225071 17068638 ~ 17075185 (-) True AMCG00019362
TU41832 other downstream 1070443 15692482 ~ 15721452 (-) True G33381
TU41680 other downstream 1799899 14951842 ~ 14991996 (-) True G33259
TU41560 other downstream 2233605 14491891 ~ 14558290 (-) False G33163
TU41559 other downstream 2299677 14491891 ~ 14492218 (-) True G33163
TU41485 other downstream 3126665 13662116 ~ 13665230 (-) True G33106
TU42573 other upstream 2598828 19442395 ~ 19448573 (-) True AMCG00019419
TU42823 other upstream 3899963 20743530 ~ 20765496 (-) True AMCG00019446
TU43148 other upstream 6304294 23147861 ~ 23199608 (-) True G34470
TU43838 other upstream 12674429 29517996 ~ 29521984 (-) True G35067
TU43847 other upstream 12701664 29545231 ~ 29550162 (-) False AMCG00019556

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00045769 True 4869 mRNA 0.48 22 NC_007135.7 34970680 ~ 35003375 (+)
grasscarp (Ctenopharyngodon idella) CI01000082_04343806_04361245.mRNA False 5642 mRNA 0.48 21 CI01000082 4343806 ~ 4362072 (+)