RNA id: AMCG00019360


Basic Information

Item Value
RNA id AMCG00019360
length 1308
RNA type mRNA
GC content 0.48
exon number 4
gene id AMCG00019360
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 16891738 ~ 16899067 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atgcccTTACCCCAGCAGCCCGGGCCTGTGCTGATGCCTGTGGGGTATTGTCACCGCTCTGATGTCACTGAGCGCACACTGGCAGTGCGAGCGGCTGCGGAGGGACCGGGCTGCTCACCTGCTGCTGCCTCAAACTCCGCACCAGACACTGTCAGACACTTTCCAACCAAACAAGAGCAAGGCACACTTAAGCAGCGTGGGATAACACCTGGACAGGTAGGTGCCAAAATAGTCAAATCCTCTTTAACAATGGGCACGCCAGTGGAGATTTTCAAGGAGGACAATTGCCTCTCAGTCTTCTCCGAGGAGTGCCTCACAAACTCCACCTGGCTCTCCGGCTATTTTGACATAGATAATGCCACGCACTATTACAACTGGGCAAACCAAACCATGTCGCCTATCATTCCCATCATCACCGCGGTTTATTCCGTGGTTTTTGTGGTGGGCTTGGTGGGCAATTGCCTGGTCATGTATGTTATCATCAGATACACAAAGATGAAGACTGCAaccaacatttacatttttaacctaGCTGTGGCAGATGCTCTTGTGACTACCACAATGCCTTTCCAGAGTACTGATTACTTGCTCAGTTCATGGCCTTTTGGAGAAGTGGTGTGCAAAGTATTTATCTCCATTGATTACTACAACATGTTCACCAGCATTTTCACATTGACCATGATGAGTGTCGACCGGTACATTGCTGTTTGCCATCCTGTCAAAGCCCTCGATTTCCGCACTCCGGTTAAGGCAAAGATAATCAATGTCTGCATCTGGATACTCTCCTCTGCAGCTGGTATACCGGCACTTATACTGGGAAGCACTCAAACTAAGGATGGTGAGTGGCCAATCTGTGTGTTTATCTCTGCCTTCGTTGTGCCCGTCCTCATCATCACGGTGTGCTACACCTTAATGATCCTTCGACTGAAGAGCGTCCGGCTCCTGTCTGGGTCCAGAGAGAAGGACCGCAATCTGCGTCGCATCACAAAACTTGTGCTGGTAGTGGTGgcggtttttattatttgttggaCTCCTATCCATATTTTCATCCTGGTCAAGGCTCTCACACATGTCCCAGAAACCACTGCCTTTATGGCAGCCTACTTTTTCTGTGTGGCGTTGGGCTACACCAATAGTAGCCTGAATCCCATTCTTTATGCATTTCTGGATGAAAACtttaaaaggtgttttaaaGACTTTTGTTTTCACTCAAAGCTGAAAGCAGAGCGTCAGAGTGCCAATAGGGTAAAGAGTACAATACAAAACCCTTCCTGCCCTCAAGAACACCCAGATGGGACAATCAAGCCA

Function

GO: NA

KEGG:

id description
K04214 OPRK1; kappa-type opioid receptor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU41928 lncRNA downstream 273047 16618302 ~ 16618691 (-) True G33461
TU41877 lncRNA downstream 579872 16272067 ~ 16311866 (-) True G33419
TU41846 lncRNA downstream 960530 15858177 ~ 15931208 (-) False G33393
TU41848 lncRNA downstream 960530 15928445 ~ 15931208 (-) True G33393
TU41716 lncRNA downstream 1635715 15254032 ~ 15256023 (-) True G33291
TU42002 lncRNA upstream 144951 17044018 ~ 17044239 (-) True G33531
TU42003 lncRNA upstream 150447 17049514 ~ 17049746 (-) True G33532
TU42004 lncRNA upstream 150930 17049997 ~ 17054332 (-) True G33533
TU42060 lncRNA upstream 404391 17303458 ~ 17303696 (-) True G33579
TU42065 lncRNA upstream 414272 17313339 ~ 17315430 (-) True G33584
AMCG00019359 mRNA downstream 48171 16791895 ~ 16843567 (-) True AMCG00019359
AMCG00019358 mRNA downstream 131297 16716365 ~ 16760441 (-) True AMCG00019358
AMCG00019357 mRNA downstream 339513 16507638 ~ 16552225 (-) True AMCG00019357
AMCG00019355 mRNA downstream 417393 16454740 ~ 16474345 (-) True AMCG00019355
AMCG00019356 mRNA downstream 470456 16390377 ~ 16421282 (-) True AMCG00019356
AMCG00019366 mRNA upstream 56823 16955890 ~ 16976970 (-) True AMCG00019366
AMCG00019363 mRNA upstream 88574 16987641 ~ 17006138 (-) True AMCG00019363
AMCG00019364 mRNA upstream 156905 17055972 ~ 17064681 (-) True AMCG00019364
AMCG00019362 mRNA upstream 169571 17068638 ~ 17075185 (-) True AMCG00019362
AMCG00019372 mRNA upstream 427524 17326591 ~ 17345515 (-) True AMCG00019372
TU41832 other downstream 1170286 15692482 ~ 15721452 (-) True G33381
TU41680 other downstream 1899742 14951842 ~ 14991996 (-) True G33259
TU41560 other downstream 2333448 14491891 ~ 14558290 (-) False G33163
TU41559 other downstream 2399520 14491891 ~ 14492218 (-) True G33163
TU41485 other downstream 3226508 13662116 ~ 13665230 (-) True G33106
TU42573 other upstream 2543328 19442395 ~ 19448573 (-) True AMCG00019419
TU42823 other upstream 3844463 20743530 ~ 20765496 (-) True AMCG00019446
TU43148 other upstream 6248794 23147861 ~ 23199608 (-) True G34470
TU43838 other upstream 12618929 29517996 ~ 29521984 (-) True G35067
TU43847 other upstream 12646164 29545231 ~ 29550162 (-) False AMCG00019556

Expression Profile