RNA id: AMCG00019361


Basic Information

Item Value
RNA id AMCG00019361
length 663
RNA type mRNA
GC content 0.51
exon number 4
gene id AMCG00019361
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 17044096 ~ 17050175 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCCATGGGTTCGGAGCGGATGGAGATGCGCAAGCGGCAGATGTCGGTGCAGCAGGAGACGCCGGGCGCTGCACAGGCACAGCCGGACGCAGGCAACCGTGCCTCCAATGCCTGCTGCttctgctggtgctgctgctgcagttgcTCCTGTCTTACTGTTAGGAAtgaagagggagaagagagagacaggagagactCTCATGATGTCAAGACAGACAGCACCACAAACTGTGAAGAAAGCCCGAACCCAACTTTGGAAGATGTATGTACCTGGGGCCAGTCATTCGACAAGCTGATGAAAAGTCCCGGTGGGAGGAATGCTTTCCGAGAGTTTCTACGAACAGAGTTTAGCGAGGAGAACATGCTCTTCTGGCTGGCCTGTGAGgaccttaaaaaagaaaacaacaaaagtatTATCGAAGAGAAGGCCAGGCTAATATATGAGGACTACATCTCAATCCTTTCGCCGAAAGAGGTAAGTCTGGACTCCAGAGTTCGTGAAGTGATTAACAGGAACATGCTTGAGCCAACATCCCATACGTTTGATGACGCACAGCTTCAGATCTACACCTTAATGCACAGAGACTCATACCCCCGATTCATGAACTCTGCCGTCTACAAGAACCTGCTCCAGACCTTATCAGAGCCGGCCACGGAGTCATAG

Function

GO:

id name namespace
GO:0043547 positive regulation of GTPase activity biological_process
GO:0038032 termination of G protein-coupled receptor signaling pathway biological_process
GO:0005886 plasma membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005096 GTPase activator activity molecular_function

KEGG:

id description
K16449 RGS; regulator of G-protein signaling

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU41941 lncRNA upstream 243169 16798149 ~ 16800927 (+) True G33474
TU41910 lncRNA upstream 540020 16496841 ~ 16504076 (+) True G33448
TU41906 lncRNA upstream 553043 16488871 ~ 16491053 (+) True G33444
TU41880 lncRNA upstream 677754 16366114 ~ 16366342 (+) True G33422
TU41864 lncRNA upstream 942937 16100958 ~ 16101159 (+) True G33408
TU41992 lncRNA downstream 7411 17057586 ~ 17058220 (+) True G33521
TU42066 lncRNA downstream 265498 17315673 ~ 17320035 (+) True G33585
TU42100 lncRNA downstream 372449 17422624 ~ 17424898 (+) False G33615
TU42102 lncRNA downstream 372449 17422624 ~ 17424898 (+) True G33615
TU42111 lncRNA downstream 372449 17422624 ~ 17424898 (+) False G33615
AMCG00019365 mRNA upstream 187814 16493467 ~ 16856282 (+) True AMCG00019365
AMCG00019354 mRNA upstream 777997 16240382 ~ 16266099 (+) True AMCG00019354
AMCG00019353 mRNA upstream 913656 15929875 ~ 16130440 (+) True AMCG00019353
AMCG00019350 mRNA upstream 1339016 15693042 ~ 15705080 (+) True AMCG00019350
AMCG00019346 mRNA upstream 1355247 15681904 ~ 15688849 (+) True AMCG00019346
AMCG00019368 mRNA downstream 25495 17075670 ~ 17078562 (+) True AMCG00019368
AMCG00019367 mRNA downstream 39894 17090069 ~ 17091118 (+) True AMCG00019367
AMCG00019369 mRNA downstream 69173 17119348 ~ 17120947 (+) True AMCG00019369
AMCG00019370 mRNA downstream 104695 17154870 ~ 17214411 (+) True AMCG00019370
AMCG00019374 mRNA downstream 165479 17215654 ~ 17216544 (+) True AMCG00019374
TU41862 other upstream 962153 16043942 ~ 16081943 (+) True G33406
TU41707 other upstream 1874255 15164348 ~ 15169841 (+) True G33283
TU41554 other upstream 2557390 14439253 ~ 14486706 (+) True G33159
TU40734 other upstream 6634599 10404639 ~ 10409497 (+) True G32539
TU40438 other upstream 7415434 9369898 ~ 9628662 (+) True G32293
TU42780 other downstream 3557299 20607474 ~ 20610889 (+) False G34170
TU42783 other downstream 3557299 20607474 ~ 20610889 (+) True G34170
TU42785 other downstream 3557299 20607474 ~ 20610889 (+) False G34170
TU43058 other downstream 5565448 22615623 ~ 22625205 (+) False AMCG00019475
TU43194 other downstream 6621950 23672125 ~ 23695801 (+) True G34511

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000021_04248892_04258642.mRNA True 1702 mRNA 0.44 5 CI01000021 4248064 ~ 4258784 (-)