RNA id: AMCG00019362


Basic Information

Item Value
RNA id AMCG00019362
length 1654
RNA type mRNA
GC content 0.46
exon number 9
gene id AMCG00019362
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 17068638 ~ 17075185 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CATAGCACTAGTAAATTCCCCCACTGATCTTCCCATTAAAACGTCCTACATTCAAGGTCCCCCAGCTCGGGCTGTCGATCTGCCTATCACCAGCAGCCCGGCGGCGCTCCACGCAGCGCGGCACGGAGGGAGGCTTGGCTGACAACGACACCAACCAACAATAGACGCGCCTTTCTGCCCACAGAAACCTGCCTATCAATCGGAAAACAGTAGAGGCGGGATTTCCTAAACGTGCTCCAGTACGAGATACACCAAATGAGATATAGGTTGTTTACCTCACCCTCTTCAAACTTCACAatacattgcattattattagcGGAGCAGAGCGCAGGCATTCCTGGACACAAGGGCTCACGCTAACCTTGACACTGCGCTGTGCATTGCTGGGATGCACCATTGGTTATTCATTTAGAGCCAGCGGAAGATCAGCAAAATCGACCTGCATTACAAAGGGGTACCATCTACTAACCGCGTCTACAGCACCAGTCGTTACATTTTGACGATTTATTCTCTTGTTGGATGTCAGCTGCCCGTCCGTTGTATGTGCGGTAACAATATGTCGGCGCCGCTTCCTGCCATTGTACCCGCCGCTCGGAAAGCCACTGCAGCGGTAATATTTCTTCATGGACTGGGAGATACTGGACATAGCTGGGCAGAGGCATTTGCAGGGATCAGAACTCCTCACGTGAAGTATATTTGCCCCCATGCGCCAATAATGCCGGTTACCTTGAACATGAATATGGCCATGCCTTCTTGGTTTGATATAATTGGGCTTAGCCCAGAAGCAGAGGAAGATGACTCTGGTATCAAACAAGCAGCAGAAAACAttaaagCCCTTATAGATCAAGAAGTGAAGAATGGTATACCCTCACACAGAATTGTTTTGGGCGGATTTTCACAGGGAGGGGCATTGTCTTTGTACACAGCTTTGACAACACAACAGAAACTGGCAGGTGTGGTAGCTCTGAGCTGCTGGCTACCACTGCGCACCTCATTCCCACAGGCAGCAGCCAATGGTGTGAATAAAGATGTGAACATCCTGCAGTGCCATGGTGAGGTGGACCCCTTGGTTCCCCTGGTGTTTGGGTGCCTCACTGTGGAGAAGTTGAAAAGTATTGTCAACCCAGCTAATGTCAGCTTCAAGACATATCCAAGGATGCCACACAGTTCCTGTCCTCAGGAAATGATGGATATCAAGCAGTTTATTGAAAAGCAGCTACCTCCAATCAACTAATCGCACAACAGAGGCCTTTAAATCATACACCAGCACCAACTGAGACTGAATCTAAATCTTATTCCCCCAATACTCTAGAACTCCAAACACATTGTTCTATACCAGCTGTATAATTACCACATTTTGCCTGTTATGCACAGATACATCATTGGGACATGCTGAGAGGTTGTGAAAAGGGAAACTTTATTTTGTAGTCTTTAAACTACTGTAATCACTTCAAGGATTGCAAGGGGCCTACAGTATTTAGGTTGCTAGTGTTTTGTTGCAACTGTTGTGGCTGTAACTGTTTGCTATTAAAGAAGCCATTtcttccaattaaaaacaatgcatttgattatCTAATACAATGTCACATTGGAaatattaatcttttaatttatgTGGATTTACAATAAATGAACATATGACGAAATCTTGAG

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K06128 LYPLA1; lysophospholipase I

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU42004 lncRNA downstream 14306 17049997 ~ 17054332 (-) True G33533
TU42003 lncRNA downstream 18892 17049514 ~ 17049746 (-) True G33532
TU42002 lncRNA downstream 24399 17044018 ~ 17044239 (-) True G33531
TU41928 lncRNA downstream 449947 16618302 ~ 16618691 (-) True G33461
TU41877 lncRNA downstream 756772 16272067 ~ 16311866 (-) True G33419
TU42060 lncRNA upstream 228273 17303458 ~ 17303696 (-) True G33579
TU42065 lncRNA upstream 238154 17313339 ~ 17315430 (-) True G33584
TU42067 lncRNA upstream 240363 17315548 ~ 17320145 (-) True G33586
TU42087 lncRNA upstream 250084 17325269 ~ 17326458 (-) True G33603
TU42135 lncRNA upstream 355121 17430306 ~ 17434591 (-) True G33637
AMCG00019364 mRNA downstream 3957 17055972 ~ 17064681 (-) True AMCG00019364
AMCG00019363 mRNA downstream 62500 16987641 ~ 17006138 (-) True AMCG00019363
AMCG00019366 mRNA downstream 91668 16955890 ~ 16976970 (-) True AMCG00019366
AMCG00019360 mRNA downstream 169571 16891738 ~ 16899067 (-) True AMCG00019360
AMCG00019359 mRNA downstream 225071 16791895 ~ 16843567 (-) True AMCG00019359
AMCG00019372 mRNA upstream 251406 17326591 ~ 17345515 (-) True AMCG00019372
AMCG00019380 mRNA upstream 339021 17414206 ~ 17421484 (-) True AMCG00019380
AMCG00019378 mRNA upstream 347483 17422668 ~ 17424664 (-) True AMCG00019378
AMCG00019381 mRNA upstream 363003 17438188 ~ 17440320 (-) True AMCG00019381
AMCG00019379 mRNA upstream 384579 17459764 ~ 17477757 (-) True AMCG00019379
TU41832 other downstream 1347186 15692482 ~ 15721452 (-) True G33381
TU41680 other downstream 2076642 14951842 ~ 14991996 (-) True G33259
TU41560 other downstream 2510348 14491891 ~ 14558290 (-) False G33163
TU41559 other downstream 2576420 14491891 ~ 14492218 (-) True G33163
TU41485 other downstream 3403408 13662116 ~ 13665230 (-) True G33106
TU42573 other upstream 2367210 19442395 ~ 19448573 (-) True AMCG00019419
TU42823 other upstream 3668345 20743530 ~ 20765496 (-) True AMCG00019446
TU43148 other upstream 6072676 23147861 ~ 23199608 (-) True G34470
TU43838 other upstream 12442811 29517996 ~ 29521984 (-) True G35067
TU43847 other upstream 12470046 29545231 ~ 29550162 (-) False AMCG00019556

Expression Profile