RNA id: AMCG00019365



Basic Information


Item Value
RNA id AMCG00019365
length 768
RNA type mRNA
GC content 0.57
exon number 9
gene id AMCG00019365
representative True

Chromosome Information


Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 16493467 ~ 16856282 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGCACCCACAGAGAGCCCaaATCGTGGAGAATCTGAAAAGttcaATGTTACATGCTGACCTCTGCTGGATAACCTATGCATATCCGGAGCAACCAGGTGTGCCTCAGCTGGACTCCTCTCAGCATCACATTCAGGAGCTGCTGAGGAGTTGCCGGTGCACACCCGTGTCCCACTCCAACTCCTCCTTGCCAGATGTGGGAACCCCCGGGGACATCTGCACCAGCTCCATCCACTCTACACTCGGGACAGCAACTCCTCCCCCTCTGGCTCTCGGGACGcTCCTGGTCGCTCCCTGTGGCACATGCCCCTCCTTTCGGCAGTACATCATCATCAGAACCATCATGCTGGCGTCAACGGCGGAGTCTATTCTCCCATCTTCTCCGATGGCCGCGACAGAAGCCAGCCTGTCCGGGTCAACGGGAGGCTCAGCGCAGCATGCTCCTGTAACGTCTGCGACCGCAGGATTAGCAGCGAAGAATGCAGAGGAAACTAAGGTGCTGCTGCGAATCCGGTTCAGTTCCTCCtcaaTCCCTTCCTTCTCTGCAGGGGGCAATGCAGGCATGGCAGCGGCCTACTCAGCTGGCAGACTGGGCATCCCTGTCACTGTCCTGGTCCCCACCAGCACCCCCTCCTTCACCATCCAGAGGCTGATGGAAGAGGGGGCCACAGTGTGGGTGGTGGGTGAGacattttcaattcattttGACATGCACTACAGTGCACAGCAGGCTACAGCCTCCAGCAGGAATTTACTaaaggatatttaa

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU41906 lncRNA upstream 2414 16488871 ~ 16491053 (+) True G33444
TU41880 lncRNA upstream 127125 16366114 ~ 16366342 (+) True G33422
TU41864 lncRNA upstream 392308 16100958 ~ 16101159 (+) True G33408
TU41859 lncRNA upstream 490266 16002796 ~ 16003201 (+) True G33404
TU41845 lncRNA upstream 562266 15928569 ~ 15931201 (+) True G33392
TU41992 lncRNA downstream 201304 17057586 ~ 17058220 (+) True G33521
TU42066 lncRNA downstream 459391 17315673 ~ 17320035 (+) True G33585
TU42100 lncRNA downstream 566342 17422624 ~ 17424898 (+) False G33615
TU42102 lncRNA downstream 566342 17422624 ~ 17424898 (+) True G33615
TU42111 lncRNA downstream 566342 17422624 ~ 17424898 (+) False G33615
AMCG00019354 mRNA upstream 227368 16240382 ~ 16266099 (+) True AMCG00019354
AMCG00019353 mRNA upstream 363027 15929875 ~ 16130440 (+) True AMCG00019353
AMCG00019350 mRNA upstream 788387 15693042 ~ 15705080 (+) True AMCG00019350
AMCG00019346 mRNA upstream 804618 15681904 ~ 15688849 (+) True AMCG00019346
AMCG00019345 mRNA upstream 867572 15605867 ~ 15625895 (+) False AMCG00019345
AMCG00019361 mRNA downstream 187814 17044096 ~ 17050175 (+) True AMCG00019361
AMCG00019368 mRNA downstream 219388 17075670 ~ 17078562 (+) True AMCG00019368
AMCG00019367 mRNA downstream 233787 17090069 ~ 17091118 (+) True AMCG00019367
AMCG00019369 mRNA downstream 263066 17119348 ~ 17120947 (+) True AMCG00019369
AMCG00019370 mRNA downstream 298588 17154870 ~ 17214411 (+) True AMCG00019370
TU41862 other upstream 411524 16043942 ~ 16081943 (+) True G33406
TU41707 other upstream 1323626 15164348 ~ 15169841 (+) True G33283
TU41554 other upstream 2006761 14439253 ~ 14486706 (+) True G33159
TU40734 other upstream 6083970 10404639 ~ 10409497 (+) True G32539
TU40438 other upstream 6864805 9369898 ~ 9628662 (+) True G32293
TU42780 other downstream 3751192 20607474 ~ 20610889 (+) False G34170
TU42783 other downstream 3751192 20607474 ~ 20610889 (+) True G34170
TU42785 other downstream 3751192 20607474 ~ 20610889 (+) False G34170
TU43058 other downstream 5759341 22615623 ~ 22625205 (+) False AMCG00019475
TU43194 other downstream 6815843 23672125 ~ 23695801 (+) True G34511

Expression Profile