RNA id: AMCG00019374


Basic Information

Item Value
RNA id AMCG00019374
length 891
RNA type mRNA
GC content 0.61
exon number 1
gene id AMCG00019374
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 17215654 ~ 17216544 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGTTCGTACCCGCTGCCGAGAGGAAGTGTTGCTTTGTTGTGAACAGGCGGCGCCACAGCTGGCGGAAGAGGAGGTCGCCCAGCCCAGTTTCTGCTCACTGGCACATAGaggcagaaagagaaagaaggaggaggagagaaaggaaggagaaggaaaaagaCGGTGTCAGTTAGATAAAGGGAGGGCTGCTATAATGGCCGCTAAGTCGGATGGGGtgttgaaaatgaagaaaagcgACGTGGCGTTCACCCCCCTGCAGAATTCAGACCACTCGGGCTCGGTGCAGGGGCTCGCCCCGGGGTCGCAGCCGGACTCGGGCGCGGGAGAGGGGGACTACGCGAACGGGGAGTCGCGCTGCTGCGGCTCCTCCTCGATGTGTCTTCGCCTGGGCAGGGAGCAGCAGAACTACTCGGTGTGGGACTGCCTCTGGATCCTCGCCGCCGTGGCCGTGTATTTCGCCGACGTGGGCACCGATGTCTGGCTGTCCGTCGATTATTACCTCCGGCGCGACTACTGGTGGTTCGGGCTCACGCTGTTCTTCGTGGTGCTGGGCTCGTTTTCGGTGCAGGTGTTCAGCTTTCGCTGGTTCGTCCATGATTTCAGCACCGAGGAGAGCGccggtgctgctgctgctgctggcgcGGCCAATTGCGCTCACATGGACGGGAAGCTCCTGAGCGGCTCTGCCTCACATGGAGACGTGGATGCCCGTCCGTCCACACCTCAGAGACAGGCGTCCACGGCTAGTAAGAGCAACACCACGaccaacagcagcaacagcagcactGCCACCCGGACTAGCAAGAAAAGGTCGACGTCCTGCTCTTTCTGCATCTGGCTGCTGCAGTCAGTCATCCACATCCTGCAGCTGGGGCAGATCTGGAGGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU41992 lncRNA upstream 157434 17057586 ~ 17058220 (+) True G33521
TU41941 lncRNA upstream 414727 16798149 ~ 16800927 (+) True G33474
TU41910 lncRNA upstream 711578 16496841 ~ 16504076 (+) True G33448
TU41906 lncRNA upstream 724601 16488871 ~ 16491053 (+) True G33444
TU41880 lncRNA upstream 849312 16366114 ~ 16366342 (+) True G33422
TU42066 lncRNA downstream 99129 17315673 ~ 17320035 (+) True G33585
TU42100 lncRNA downstream 206080 17422624 ~ 17424898 (+) False G33615
TU42102 lncRNA downstream 206080 17422624 ~ 17424898 (+) True G33615
TU42111 lncRNA downstream 206080 17422624 ~ 17424898 (+) False G33615
TU42132 lncRNA downstream 214409 17430953 ~ 17432628 (+) True G33634
AMCG00019370 mRNA upstream 1243 17154870 ~ 17214411 (+) True AMCG00019370
AMCG00019369 mRNA upstream 94707 17119348 ~ 17120947 (+) True AMCG00019369
AMCG00019367 mRNA upstream 124536 17090069 ~ 17091118 (+) True AMCG00019367
AMCG00019368 mRNA upstream 137092 17075670 ~ 17078562 (+) True AMCG00019368
AMCG00019361 mRNA upstream 165479 17044096 ~ 17050175 (+) True AMCG00019361
AMCG00019373 mRNA downstream 82162 17298706 ~ 17303866 (+) True AMCG00019373
AMCG00019371 mRNA downstream 129078 17345622 ~ 17370582 (+) True AMCG00019371
AMCG00019375 mRNA downstream 169306 17385850 ~ 17415697 (+) True AMCG00019375
AMCG00019376 mRNA downstream 232807 17449351 ~ 17452653 (+) True AMCG00019376
AMCG00019382 mRNA downstream 411848 17628392 ~ 17636437 (+) True AMCG00019382
TU41862 other upstream 1133711 16043942 ~ 16081943 (+) True G33406
TU41707 other upstream 2045813 15164348 ~ 15169841 (+) True G33283
TU41554 other upstream 2728948 14439253 ~ 14486706 (+) True G33159
TU40734 other upstream 6806157 10404639 ~ 10409497 (+) True G32539
TU40438 other upstream 7586992 9369898 ~ 9628662 (+) True G32293
TU42780 other downstream 3390930 20607474 ~ 20610889 (+) False G34170
TU42783 other downstream 3390930 20607474 ~ 20610889 (+) True G34170
TU42785 other downstream 3390930 20607474 ~ 20610889 (+) False G34170
TU43058 other downstream 5399079 22615623 ~ 22625205 (+) False AMCG00019475
TU43194 other downstream 6455581 23672125 ~ 23695801 (+) True G34511

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00032363 False 4674 mRNA 0.47 3 NC_007113.7 27670284 ~ 27775236 (-)
grasscarp (Ctenopharyngodon idella) CI01000004_09592354_09593541.mRNA True 957 mRNA 0.54 2 CI01000004 9592296 ~ 9593541 (-)