RNA id: AMCG00019377


Basic Information

Item Value
RNA id AMCG00019377
length 1866
RNA type mRNA
GC content 0.40
exon number 3
gene id AMCG00019377
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 17481323 ~ 17486099 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CACCCTCACTTGCAATCCAATAAATTCACCTGTACATAGACATCAGCCAGGTTGCAGGCGTGTTGCGTCTTTCAGGTGACAGCTCTCTCCCTATTCTTTATATAACGGGAGCTGTAAGACATAGTGGTATTTTAGTTTAACTGcaggtcatttatttttctagatTTGCTCCAGAGGGGTTGGCTCACTCCTGTATAAATATTTGGTGCAAGGCTTGGTCTGCATCATTGCAGCTTGAAACTTCAGAGGACTTTCCTATCCAGGGAGAAAAGACCCCATGGCGTTAGCTGTAAGATGCCCGTGTTGGCTGCTGGTCCTGAGCGCCTGTCTGATACTCACCGTGAGAGCCGACTGTGGCAAAGACTGTACCCACTGCACATACCATCCACAGGGTCGCCAGGCAGAAATCAACACTCTGacatGTACATTAGAATGTGAAGGGAAGCTGGCTTCTGCAAAATCCTGGGATCTGTGCAAAGAAATATTACAAGGAAAAAAGGGCGATATTTCATCAGAAGAAGATAACATTGCCATTGAAAGTGTCAATCAAGAGAATGATGGCCACCAACTTGCAAAGAAGTATGGTGGCTTTATGAAACGCTATGGTGGCTTCATGAAGAAAACAGCTGAACTCTACAATGTCGAACCAGAGGATGAAAACAATGGTAGAGAGATTCTAGCTAAGAGGTACGGAGGATTTATGAAGAAAGAtgcagagagtggagtagacaCAGTTAACCTTTTAAAGGAGATCCTGAATGCAGGTGGCAGTGACATGGAAAGCCATGGAGACCATGATGGCGAGATCATGAAAAGGTATGGAGGATTTATGAGGAGCATCAAGAGAAGCCTAGACCTTGAAGATGGGATAAAAGAGCTTCAGAAAAGATATGGTGGGTTCATGAGAAGGGTGGGCAGACCTGAATGGAAAGAAGACCAAAAAAGGTATGGTGGATTTCTCAAGCGATCCAGAGATGACACCGCTGAAAGTAACTCTGAAGATATGcaagacatggaaaagagatATGGAGGATTTATGGGATATTAGTTTCCAAATCAAAAGACACTCACATgaatcatattttgttgttctaCTGTCTTGCTTGCGATGTACAGTTTTTTACTGTCTAAGGTAAAGATTTGCAACTGTTTCCTCCTTCTCGTTCAATCTACACTGCAaaccacatttatttaaaatagatatgtttttaatttctgtctGATAAGAACAATGCAGTTTCCATTACATGTAACACCTACTGTGTTGTCCTTGACCTGGcacatgttgtgtttatgttAGCAGACGCTTTTACCGTTCAGTTGTGTTTTCAACTTTACCTCTTTCTTGTCAATATTAGTGAAAATTGTGTACGAAAAGACTGCACAAAAGTCTGAGAAATTCCATTCCGTGGACTGTGTTAGTTTAAATtgtcataaaatacattttctcctgAATAAACTACGTGTTTGCCAGGAGAGGGGTTGCAGTACGTTACTGAAACAGATTTGTTCATATTTCAGTGGTATGTAGTTCTTGAGGcttaaactgtattttgttatatgctctatattttttcatttgaatcaaAGTTGTAACTCCTACTGCTTAGCTGTACAGATTataataaattcattttaactGCAGAACCTAATGTGTTTGTCATCAGTTACCATTCTAGGTGATTCCTTGTAACATACCATGCCTTTCAACACACAATAAACTGAGCTCTCATTATATTGGAAACACCTCCAGTTTTAAAGTATGATTTCATCTTAGTTTATGACTCAAAAACCTGCACAGTACAGTGTTCTGAAATCAGAAGCACATCATGTTCAGTGCAGTTGGCAGTAGAGAAATCTCTGGGA

Function

GO: NA

KEGG:

id description
K18832 PENK; proenkephalin A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU42135 lncRNA downstream 46732 17430306 ~ 17434591 (-) True G33637
TU42087 lncRNA downstream 154865 17325269 ~ 17326458 (-) True G33603
TU42067 lncRNA downstream 161178 17315548 ~ 17320145 (-) True G33586
TU42065 lncRNA downstream 165893 17313339 ~ 17315430 (-) True G33584
TU42060 lncRNA downstream 177627 17303458 ~ 17303696 (-) True G33579
TU42171 lncRNA upstream 137861 17623960 ~ 17624226 (-) True G33665
TU42194 lncRNA upstream 257063 17743162 ~ 17773325 (-) True G33686
TU42271 lncRNA upstream 692990 18179089 ~ 18198157 (-) True G33758
TU42278 lncRNA upstream 729509 18215608 ~ 18216742 (-) True G33765
TU42333 lncRNA upstream 898853 18384952 ~ 18386998 (-) False AMCG00019396
AMCG00019379 mRNA downstream 3566 17459764 ~ 17477757 (-) True AMCG00019379
AMCG00019381 mRNA downstream 41003 17438188 ~ 17440320 (-) True AMCG00019381
AMCG00019378 mRNA downstream 56659 17422668 ~ 17424664 (-) True AMCG00019378
AMCG00019380 mRNA downstream 59839 17414206 ~ 17421484 (-) True AMCG00019380
AMCG00019372 mRNA downstream 135808 17326591 ~ 17345515 (-) True AMCG00019372
AMCG00019383 mRNA upstream 127017 17613116 ~ 17621891 (-) True AMCG00019383
AMCG00019391 mRNA upstream 321356 17807455 ~ 17840411 (-) True AMCG00019391
AMCG00019390 mRNA upstream 411092 17897191 ~ 17911523 (-) True AMCG00019390
AMCG00019392 mRNA upstream 663388 18149487 ~ 18165134 (-) True AMCG00019392
AMCG00019396 mRNA upstream 898768 18384867 ~ 18441981 (-) True AMCG00019396
TU41832 other downstream 1759871 15692482 ~ 15721452 (-) True G33381
TU41680 other downstream 2489327 14951842 ~ 14991996 (-) True G33259
TU41560 other downstream 2923033 14491891 ~ 14558290 (-) False G33163
TU41559 other downstream 2989105 14491891 ~ 14492218 (-) True G33163
TU41485 other downstream 3816093 13662116 ~ 13665230 (-) True G33106
TU42573 other upstream 1956296 19442395 ~ 19448573 (-) True AMCG00019419
TU42823 other upstream 3257431 20743530 ~ 20765496 (-) True AMCG00019446
TU43148 other upstream 5661762 23147861 ~ 23199608 (-) True G34470
TU43838 other upstream 12031897 29517996 ~ 29521984 (-) True G35067
TU43847 other upstream 12059132 29545231 ~ 29550162 (-) False AMCG00019556

Expression Profile