RNA id: AMCG00019379


Basic Information

Item Value
RNA id AMCG00019379
length 2983
RNA type mRNA
GC content 0.36
exon number 8
gene id AMCG00019379
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 17459764 ~ 17477757 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATTAAATTCAGCTTGAATTGAGCCTGCATTAACGTCAGTCGGAGAGATTGCTAAGTTACTGTCCAGTGCGTCCGCCTCCCCCGCTGAGCACAACAGACCAAAGACACACCCTTTGATGTTTCACTTCTGAAGAGGGCATTTAACAcgaaatataacaaaactgcGAGGACTGCACCTAATGGATTAAGTCGCATTTCACGTTTGCGCTGGCGGTTACGCAAACCATTTTCTGCTGGATATAAGGAGGAGTGACCACAGTAGGCTTGTCCCATTGTAACAGCAGCTCTTTGAAGTGTAGTTGGGTGTCGGTTGTCTCCACAATGAATTTCTTCCTGGAGACACTCCAGGTGTTGGTCCTGTCAATATATTACCTACTTGAATCTTTTGTACTGCTATTCATCCCGGTCAGGAGAAAGAATGTGACTGGAGAGATAGTGCTGATTACAGGGGCTGGCAGTGGCATTGGGAGGCTCATGGCAGTAGAGTTTGCCAAGCTGGGCTCCACGTTGGTACTGTGGGACATCAACCAGGAGGGTAGTAAGGAAACTGTCAGGCTAGTCAAGGAAAATGGAGCCTCCAGAGTCCATTCATACCTCTGTGACTGTAGTAATAAGGCTGAAGTCTACAGAGTTGCAGATCAGgtCAAAAGGGAAGTTGGTGATGTTAGTATTCTTATTAACAATGCTGGAATTGTCACTGGCAAGAAATTCATTGAATCCCCAGATAACCTCTTAGAGAAGACTATGGAAGTCAATAGCATGGCTCACTTCTGGACTTACAAAGCATTCCTGCCAGCAATGATTGCTAGCAACCATGGACATCTTGTCAGTATTGCCAGTTCTGCTGGGCTGATTGGTGTAAATGGACTAGCAGATTATTGTGCCAGTAAATTTGCAGCTATTGGTTTTGCCGAGTCTGTGGCTCTGGAATTGTTGTCTACTGGGAAAGATGGGATAAAAACTACAATTGTTTGTCCATATTTCATAAACACTGGAATGTTTGATGGATGCTGTACAAAGTGGCCCCGTATGCTTCCTATTTTGGAGCCAAATTATGTTGCAAGAAAGATTGTGGATGCAATTCTGAAGAATCAGGTCCTTCTATTGATGCCAAGAAGCTTGTACCTTTTAATGGCTTTGAAGAAcatTATACCTGTAAAGCTTGGGGTGCTCCTGGGCCTGTATCTTGGTGCTTTTAACTTCATGGATCAATTCATGGGTCGTACAAAGAAGGATTAACAATCAAGAATTCATCACAACTTGTGCTTGGACAGTTTTATTCACATATGACTGCAACACTCTATGAGAGTGGATCGGATCCCAGGTTTTAGAATTTAAATTACTCATAAaatagatttgtattaattctgTACATTAGAATAGTTTCATTGCCTTTTATATTGAGAACAGaacttgactttttttttaacctacgTATGTAACTTCATGTACACAACTGTGTAGTAGTTATATAGTTAAGATGTTGATTAAGGAGAACACAGTCTATATGTCCCTCCTTACCTTCACCTGACCAAGAATTTCTATGTATGATTAAGTGTTAAATACATCACAGTTCCATGTTACCTTACATTTTCCAATACAaggaatatataaaaaaataacattttgaaggCAAGTAAAGCAAATTAACTTATGAAATAGCACTTCCCTATAGAGAAGTTTGTTATAGGCTCATGCCTTAGCATTTTAAATTTtgatttgtgaaatatatatttctagacTTATTTTAATAGCTATTTAATTCATGTCTGTGAAGCCACCCCATAGGGATTTGACAAATGTAATTTACCAGTGTAGGTAATATAACTAAAGTAATAATTTTACATACATGAGCTATGGGCAGGTTTATGtgttatgaattaataataataataataacctcaGCAACAGAAGGTGAAGATAATTTACTTTTGGTTTGGTATTTGTGTATGCTGTGGCTCCTCAGTTAGTGgagtaaataatattttttttaatgtcattttcaaaCTAATTTACTAAATTCATCCAATGTGTAGGATGTCTGACAGATTATATCTACATCTGACCACttgatattatttaattgtaatgtttctttatttcaatcTTTATTTACTGCTTGACAGAAGAATTTTGGTTATGTAAGACTTATTTGCTCATGAATTGGTGCATTATTTCATGTTTCAAGTTAAGCTGAAGTCTgcaacatttcaattttatgtAGCCTAATCTACTTGGTATTGTATCAGATGTATAGAATGTGTACATTCTTGTAAGTGAAGTGAGCATCATAAAATAACTATGCCCACCAAAATTCAGAATTTCAAAAGTTGTATTACTTACATCGTACTTATTTCACTGTATTGCATTGTAGTGTGATCTAAACTTGACAGTTGCCTgttgtttattgtaaattacTGTTGTTTACTGTAAAGCATGTGTGACAGGTGTGAATGGTACTGCATCACTGTCCTTTACAATGTACAACCTCAATGAATATACATTCGACAATtgtaatattatgaataattttcCAGTCTGGATTATAACCACTAAGAACTATTACATCTTGAACTATATTGCTATATGCTATATTGTgtgaaacatcttggggaggcagTGGATCGATACATCCAAGAGGACTACTGTTGACATTGTTTTAGCACTTTACAACAGCATTTTAGAGATTAGGAGTACATTTTACTAATTGCATTAAACTACATTTTGCCCacttctgtagtttttttttctattattttatacttGTCTCTTGATTGTCTCTCATTAAAGCTGTTGTATCTTTGCGTTCTGTTGCACAATCCTGTATGATCTTGCCATATCCACgcaattacaatgtttttatataatctaAGATGACCTTCAACCAAAACCATTtcaaaaatcaattaaaaaatcaattgttatttcaaaatggtttaaataaaatgtatcactgAGCACTTAGAGCACCTAATAAGTACCCC

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016491 oxidoreductase activity molecular_function

KEGG:

id description
K15734 SDR16C5; all-trans-retinol dehydrogenase (NAD+)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU42135 lncRNA downstream 25173 17430306 ~ 17434591 (-) True G33637
TU42087 lncRNA downstream 133306 17325269 ~ 17326458 (-) True G33603
TU42067 lncRNA downstream 139619 17315548 ~ 17320145 (-) True G33586
TU42065 lncRNA downstream 144334 17313339 ~ 17315430 (-) True G33584
TU42060 lncRNA downstream 156068 17303458 ~ 17303696 (-) True G33579
TU42171 lncRNA upstream 146203 17623960 ~ 17624226 (-) True G33665
TU42194 lncRNA upstream 265405 17743162 ~ 17773325 (-) True G33686
TU42271 lncRNA upstream 701332 18179089 ~ 18198157 (-) True G33758
TU42278 lncRNA upstream 737851 18215608 ~ 18216742 (-) True G33765
TU42333 lncRNA upstream 907195 18384952 ~ 18386998 (-) False AMCG00019396
AMCG00019381 mRNA downstream 19444 17438188 ~ 17440320 (-) True AMCG00019381
AMCG00019378 mRNA downstream 35100 17422668 ~ 17424664 (-) True AMCG00019378
AMCG00019380 mRNA downstream 38280 17414206 ~ 17421484 (-) True AMCG00019380
AMCG00019372 mRNA downstream 114249 17326591 ~ 17345515 (-) True AMCG00019372
AMCG00019362 mRNA downstream 384579 17068638 ~ 17075185 (-) True AMCG00019362
AMCG00019377 mRNA upstream 3566 17481323 ~ 17486099 (-) True AMCG00019377
AMCG00019383 mRNA upstream 135359 17613116 ~ 17621891 (-) True AMCG00019383
AMCG00019391 mRNA upstream 329698 17807455 ~ 17840411 (-) True AMCG00019391
AMCG00019390 mRNA upstream 419434 17897191 ~ 17911523 (-) True AMCG00019390
AMCG00019392 mRNA upstream 671730 18149487 ~ 18165134 (-) True AMCG00019392
TU41832 other downstream 1738312 15692482 ~ 15721452 (-) True G33381
TU41680 other downstream 2467768 14951842 ~ 14991996 (-) True G33259
TU41560 other downstream 2901474 14491891 ~ 14558290 (-) False G33163
TU41559 other downstream 2967546 14491891 ~ 14492218 (-) True G33163
TU41485 other downstream 3794534 13662116 ~ 13665230 (-) True G33106
TU42573 other upstream 1964638 19442395 ~ 19448573 (-) True AMCG00019419
TU42823 other upstream 3265773 20743530 ~ 20765496 (-) True AMCG00019446
TU43148 other upstream 5670104 23147861 ~ 23199608 (-) True G34470
TU43838 other upstream 12040239 29517996 ~ 29521984 (-) True G35067
TU43847 other upstream 12067474 29545231 ~ 29550162 (-) False AMCG00019556

Expression Profile