RNA id: AMCG00019380


Basic Information

Item Value
RNA id AMCG00019380
length 3146
RNA type mRNA
GC content 0.44
exon number 18
gene id AMCG00019380
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 17414206 ~ 17421484 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGCGGCTCTGACTGCGCAGATGTGCGCTGTGGCTCATTtattcagcagcagcagcagcagtgtgagGACAGCAGAGGACATTGCTACTATAGTACACAAAGGTATTGTTTAATGCGACTCCAGCTGACTTCTGTAAACTGGTAACATTTTATCAATCGATATCCATAACCTGTATGACATAATAAGTGAAAAACAAGCGATGAGATCCTGTTTAAATAAGCGACAACCTAAACCCATTGCCAGCTGATCGCAGTCGTCGTGTGGGGGTGGTAGAGATGTCCACTGATGAGAGCTGCATGCTGGCGGATGTGGACGCCATGGAGTCCACGCCGTGCGAGCTTCATGTGGAGCACCTTCACAAAGGCGCCCTGTCTGAGCTGTCCGCAATATCGGCAACCCCCGCAACCCCCGCCCAGGTTGACCCAGTTGGTAAGACTGAAGAGCAGCAGCTAAAGGTCTACCTAAGAGTGAGACCGTTTTCCAAGGAAGAGATCTCGAATAATGAGGATCAGGGTTGTGTCGTTTTGGAAAGTGCTGAAGTAGCAGTGCTGCAGGCCCCTAAGGAATCCTTAACGATGAAGAACAGCGAGAAGGGGATTGGACAGGCCATGCATAAGTTTTCCTTTTCTCAGATCTTTGGACCTGAAACAACACAGACAAACTTCTTTGAAAGATCTGTTCAAGACCCTGGCATTTTACCCCGAGCTCTTGATTTGATCTTTAATCATATAAAAGGGAAGCAATATGAACAAATGGATCTGAAGCCTTATCTCGGCAGTGATGTCCAGTATCTAGATTCTGAGCAAGTTCAGATGGAGAAATCCACAAAAGCTGCGGTGTTTGCATTACTCAAAGAGGAAAATGACCCATCTCTGAAAGCCGGTGGAAGCGCAACTGCTATGAAAAGCATGTCGAAATCTCCATCTACAGCGAGTTTGTCCTTTTCTTCAGTATCCTATGATCAGTCCGGTCTGTTTGACTCGACTGATTCAGAGCAGGATACTTCAAAGTTCTCGGTGTGGGTCTGCTTCTTTGAAATTTATAACGAATGTGTATATGATTTGCTTGATCTGATTCCTACCTCTAAAGGCAAGAAACGTTTAAAGTGGATTTATGTCCAGAACACTGAAGAAGCTTGTAAAATTTTgaaaattggaaataaaaaccGAAGTGCGGCCTCTACAAAGATGAACCAGTCATCAAGCAGAAGCCACAGCATATTTACCATTAAACTTCTGAGAATTCAAGGCACTGAAGTTCAGAAGATATCCGAACTCTCACTTTGTGACTTGGCGGGCTCTGAGAGATGCAACAAAACCAAGACATTTGGAGAGCGCTTGAAAGAAGCTGGAAACATCAATAATTCACTGCTTATTCtgggaaaatgcatttctgcacTGCGTCAAAACCAGAATGTAAAAACCAAGAACAGTTATGTCCCTTTTCGTGAGAGCAAACTGACCAGGCTGTTTCAGTCTATCTTCTGTGGGAAGGGCAGAGCATGCATGATTGTCAACATAAACCAGTGTGCTTCCACCTATGACGAAACTCTCCACGTGATGAAATTCTCTGCTGTAGCCAAGCAGGTGGTGCAGATAATAACCCCCAAAACCTTGGAAAGTATAGCTCCTAGACTGGTGGGAAGGGATGGAAAACCTCTCGTGAAGAACGGGGTCATTGACAATGAGGCCCTGGAAAGTTACCTGTCGGAGGAAGAATTGcttgatgaagatgatgatgatgaagctGACATGTCAATCTTGCCTCAGgagGAGCTCCTAAATATTATCGAGAGCCTCAAAGAGAAGTTGCTTGTGGAACGTCGTAGAAATCTGGTTCAAGAGATCGAGATTCGTAAAGAGATGGGCGATGCGATGCTGCAGCAGCTCATGGAGAGCGAGGAGACCAGGAGCAGGCAGATTGAAGAATTAAAAGACAGCTATGAGGAGAAGCTGGAGAACACCTTTGACATGTACAAGGATGCCATCAAGGAGCACGCTTATCAATGTGCCCTGGAAAGAGTCGAGGATGAATATGTGCCAGTGGAAGAGTTTCTTGAAGAGCAAAAGCATGTTGAGGAGCTGCAGAAGAAACTTGCAGAAACGGCACATAGGCTAAAAGCTTTCCAGGATCCGTTGGCTCCGCAGACCATGGAGAGCTCCACTCGGTGTTCCCCAGAGACGGACATCGCGGTGCTCAATGAAAACCAAGCCCTTTCCGAGGCCAATTCCTTATCTGAACGGCTCCATGAACAGAAAGACGAGATCATCAAATCCTTGAAGAAAAAGATTGATGAAATGAATGAAACCCTCCAGGAAGCCGGAGAGAGCTTTAGGGAAAAGGAAGCTGAAATCAAGGACTTTCTAGAGCGAATTCTCCAACAGGACCAGGCAATTGAAAGACTCCAGAGCAGCAATTCAGAGCTAGAGATTGTGGTGTCGCAGCTTAGAGAAGACCTTCAACGGCTAAATCAGCTTTCAAAAGAAGTCTCTGAGCAGCCTCGACCCAAGAGAGGCCTGCTTGCCAACATCAAGGCCTCCGTTAGTTCCCCTGTAAAGCTGCCTCTCAGCCGGACTTTGAAGAAGTCTGTCAAAAGCACGCCCAGATCCACCCAGAAGATGGCCTTGTAAAATGAAACTGCCATTTGTCATTTATTGTTGtacaaatcttttatttttttttaatatatatacacattaaagttgatttaaattataaaattgtcTTTTACATGTTAAATTCTGTACACAAAATGCTTTGAGGCCTCCATGAAATCCAGGAGCACTGCTTTGATCCGGTTTAGAAAAGCAATCCGTTTTTGTATTATCTCATGATTAATGGTTCATCGCCACAACCGTACAGTGTATTTTAGAAATGGTTGTTCTTGTTTAGTATCGTTGCATGTATACATTAGGATCATACAGTATGGTATGCTGGAAATGGACATTAGAGGGTGCTATagctaaaacaaatataattaatacaatgttCACTTAAAGGCGAACGCCACCAAAAATCCATCTGGTCTTAGGTTAGTCTATAAGTAGAAACtcattctgtggagtgagtttttcatttccagctcattctatgtaccataAGTCAGAGATTGAAAggtttctggtacatagaatgagctggaaatg

Function

GO:

id name namespace
GO:0043229 intracellular organelle cellular_component
GO:0005488 binding molecular_function

KEGG:

id description
K10402 KIF20; kinesin family member 20

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU42087 lncRNA downstream 87748 17325269 ~ 17326458 (-) True G33603
TU42067 lncRNA downstream 94061 17315548 ~ 17320145 (-) True G33586
TU42065 lncRNA downstream 98776 17313339 ~ 17315430 (-) True G33584
TU42060 lncRNA downstream 110510 17303458 ~ 17303696 (-) True G33579
TU42004 lncRNA downstream 359874 17049997 ~ 17054332 (-) True G33533
TU42135 lncRNA upstream 8822 17430306 ~ 17434591 (-) True G33637
TU42171 lncRNA upstream 202476 17623960 ~ 17624226 (-) True G33665
TU42194 lncRNA upstream 321678 17743162 ~ 17773325 (-) True G33686
TU42271 lncRNA upstream 757605 18179089 ~ 18198157 (-) True G33758
TU42278 lncRNA upstream 794124 18215608 ~ 18216742 (-) True G33765
AMCG00019372 mRNA downstream 68691 17326591 ~ 17345515 (-) True AMCG00019372
AMCG00019362 mRNA downstream 339021 17068638 ~ 17075185 (-) True AMCG00019362
AMCG00019364 mRNA downstream 349525 17055972 ~ 17064681 (-) True AMCG00019364
AMCG00019363 mRNA downstream 408068 16987641 ~ 17006138 (-) True AMCG00019363
AMCG00019366 mRNA downstream 437236 16955890 ~ 16976970 (-) True AMCG00019366
AMCG00019378 mRNA upstream 1184 17422668 ~ 17424664 (-) True AMCG00019378
AMCG00019381 mRNA upstream 16704 17438188 ~ 17440320 (-) True AMCG00019381
AMCG00019379 mRNA upstream 38280 17459764 ~ 17477757 (-) True AMCG00019379
AMCG00019377 mRNA upstream 59839 17481323 ~ 17486099 (-) True AMCG00019377
AMCG00019383 mRNA upstream 191632 17613116 ~ 17621891 (-) True AMCG00019383
TU41832 other downstream 1692754 15692482 ~ 15721452 (-) True G33381
TU41680 other downstream 2422210 14951842 ~ 14991996 (-) True G33259
TU41560 other downstream 2855916 14491891 ~ 14558290 (-) False G33163
TU41559 other downstream 2921988 14491891 ~ 14492218 (-) True G33163
TU41485 other downstream 3748976 13662116 ~ 13665230 (-) True G33106
TU42573 other upstream 2020911 19442395 ~ 19448573 (-) True AMCG00019419
TU42823 other upstream 3322046 20743530 ~ 20765496 (-) True AMCG00019446
TU43148 other upstream 5726377 23147861 ~ 23199608 (-) True G34470
TU43838 other upstream 12096512 29517996 ~ 29521984 (-) True G35067
TU43847 other upstream 12123747 29545231 ~ 29550162 (-) False AMCG00019556

Expression Profile