RNA id: AMCG00019382



Basic Information


Item Value
RNA id AMCG00019382
length 942
RNA type mRNA
GC content 0.48
exon number 4
gene id AMCG00019382
representative True

Chromosome Information


Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 17628392 ~ 17636437 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GCCTTGGATCcatgcaaagaaaaagaaaagcattactACAATTTCATAAGGGAGAACAAACACATGCCTGCAACCCAGATTCTGGAAACTCTGCTTCGACAAGGAAAAAGTCTGGATAATATTATGCAAACTGAAGCCCAGATTCCAAGAGCTGGGAGTGCTTTAAATGTGGACACTTCCCTGCAGCCAAACAAAAGACTAAGGACTGCTGATAATGATCTTTGCCCAAGTGACCCTGACACAACTCAAACTCGACCTCACTTTGGCCTCATGGCTCCTTTACAGCCCAGCACTGCTTGGGGTTTGCCCTGCCCAGCAGTGAAATCTGAGCAAGTCATCGAGAACAGTTTCCTTATTTTCAAAACCAGAAATGTAGAGCCCTGCTATGAGGAAAATGAAAGGCAAGGGTCAGATGACAACCCGTTTGCCGTGCTGGAGAAACTGATCAAGGAGAACCAGGAGCTTCGGAAGGAAAATGCTCACCTCAAGCAACTGCTCCAGGCAGCTCAGAATGCAGcaccTTTTACAGGCCTTCCCCTAGAAACCCGTCAGTCAGCAGCTTTCTACCTAAAGATGGTGCTGGAAAATCTGGAGGGGGCAGCTGGGTATCAATCTCCAGTCTCATGTCATCCCTCTGGGAGCAGAAGACCTCTAGACAATAATCTGAAGCTCTTCCAGGAAAGACATTTGAGGCCTTTGATTGTGGACCCTCATGATCCTGAGAGATATGCTGAAGTCTTGGTTGAATCAAACAAGCTGCACAATGTGTTGAAGAAGGCCAGGGAGCAGAAATCCCAGCAGGGAGGCTGCCTTCTCAATGGAGTCATAGATCTGGTGTTCAGTCCTCAAGAGCTAGCTGAGTCCCATGGGCTGGGGCTGAAAGGGAAAGGCAAGGAAGAGAAAGCCCTGGATAAGGTTAAAGTGGCTGCTTGTGAAGCATGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU42143 lncRNA upstream 175733 17449320 ~ 17452659 (+) False AMCG00019376
TU42132 lncRNA upstream 195764 17430953 ~ 17432628 (+) True G33634
TU42100 lncRNA upstream 203494 17422624 ~ 17424898 (+) False G33615
TU42102 lncRNA upstream 203494 17422624 ~ 17424898 (+) True G33615
TU42111 lncRNA upstream 203494 17422624 ~ 17424898 (+) False G33615
TU42262 lncRNA downstream 507059 18143496 ~ 18144704 (+) True G33750
TU42312 lncRNA downstream 748447 18384884 ~ 18389982 (+) True G33794
TU42313 lncRNA downstream 758964 18395401 ~ 18395619 (+) True G33795
TU42314 lncRNA downstream 762579 18399016 ~ 18399743 (+) True G33796
TU42319 lncRNA downstream 794927 18431364 ~ 18438265 (+) True G33800
AMCG00019376 mRNA upstream 175739 17449351 ~ 17452653 (+) True AMCG00019376
AMCG00019375 mRNA upstream 212695 17385850 ~ 17415697 (+) True AMCG00019375
AMCG00019371 mRNA upstream 257810 17345622 ~ 17370582 (+) True AMCG00019371
AMCG00019373 mRNA upstream 324526 17298706 ~ 17303866 (+) True AMCG00019373
AMCG00019374 mRNA upstream 411848 17215654 ~ 17216544 (+) True AMCG00019374
AMCG00019388 mRNA downstream 71093 17707530 ~ 17708615 (+) True AMCG00019388
AMCG00019387 mRNA downstream 87986 17724423 ~ 17738652 (+) True AMCG00019387
AMCG00019385 mRNA downstream 123636 17760073 ~ 17764666 (+) True AMCG00019385
AMCG00019384 mRNA downstream 146897 17783334 ~ 17793587 (+) True AMCG00019384
AMCG00019386 mRNA downstream 163168 17799605 ~ 17804445 (+) True AMCG00019386
TU41862 other upstream 1546449 16043942 ~ 16081943 (+) True G33406
TU41707 other upstream 2458551 15164348 ~ 15169841 (+) True G33283
TU41554 other upstream 3141686 14439253 ~ 14486706 (+) True G33159
TU40734 other upstream 7218895 10404639 ~ 10409497 (+) True G32539
TU40438 other upstream 7999730 9369898 ~ 9628662 (+) True G32293
TU42780 other downstream 2971037 20607474 ~ 20610889 (+) False G34170
TU42783 other downstream 2971037 20607474 ~ 20610889 (+) True G34170
TU42785 other downstream 2971037 20607474 ~ 20610889 (+) False G34170
TU43058 other downstream 4979186 22615623 ~ 22625205 (+) False AMCG00019475
TU43194 other downstream 6035688 23672125 ~ 23695801 (+) True G34511

Expression Profile