RNA id: AMCG00019383


Basic Information

Item Value
RNA id AMCG00019383
length 3309
RNA type mRNA
GC content 0.37
exon number 5
gene id AMCG00019383
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 17613116 ~ 17621891 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCGTGGACGTGGAATTGTTTGCTGAAAAATGGTTGTGTGCACTCAAATTATGTCTGGCACTAAATAGGAGATGAGTCGTTTTATTTGCCTATGTTATTTCTTAAAGTCTGTATTTTCATGCGCTTACTAAATTGGTTTGATTATAATATATACGAATAACCTACCGATACCACTTGAATTCAGCGAAGCATCGTCATGTAAAGAGCAGTTATGATAAACATAGCTCAAACATATGTATACACAATTTTTAGTACATTACGAaagataaatatgtatttcatagaTGTAGGCGGTAAACCTGTTTTTGCAAATACTGCAACACATTACTAGAAACTATAATTTTGTTGATAGAAAGTTTAGTATTAAtcctacattttatattgagaTCTACATTTCTACGTATATTCGCTCTGCATGCATGTAGTCTTGTTCTTACTGCAGTAGCATAGCCAGGGATTCATGTGCAATGGCTCCGATGGGGATCAGGCTGTCTCCGCTTGGGGTGGCTGTATTTTGTGTGCTGGGGCTGGGGGTGATCTATCACCTGTACTCGGGTGTGATATCCAGCAGGATAGCCGCATTCAGGCAGGGGAAAAGTGTGGACCTGCGGGACTTACTGGCGCTGTCATTGGAGGCTGCAGTCTCAGGGGGCCGAGAGGTAAAACGGATCCGAGAGGATGACACTCTGGATGCCAAGTCCAAGGGATTGACCCGGGAAGGTGTTAACGAAATGCTAACACTGGGGGACTTATACTCACACAGGAAGATGTATCACCTCATTAAAAACGCCTACCCCTTTCTACAGGTCAACTCAGAGGAACACGATGAGGCTGCTGACCAAGAAACTGCTGTGTGGAGCCATAAGATTCCCGATGACATTCAAGCCACGATCACCGAGAGCAGAGAAGTACCAGCCGAGAGTATTACTGTGTGGATAGACCCTCTGGATGCAACAAAGGAGTACACAGaGAACCTTCGCCAGTATGTCACAACAATGGTTTGTGTTGCTGTAGATGGTGTCCCCATAATTGGAGTAATTTACTATCCTTTCACAGATTACACAGTGTGGGCAATGGTAGGTGCTGGCTCCAGTGTGAAAGCTCGAGCTTCATACAATGAGAAGTCGCCCAAAGTCATCGTCTCGCTCTCTCACGCCGGGAAGGTCAAGCCCTTCATTCAGGAAGCTTTTGGGAATGATACGGGAATCATTGCAGCAGGAGGAGCAGGTTATAAAGTTGGTGCTCTATTGGACATGCCTGACAAGTATGAAAAAGCAGACGTCTATATCCACGTCACATACATCAAGAAGTGGGATATTTGTGCAGGCAACGCAATTCTAAAAGCCCTTGGAGGTCACATGACCACTCTGAAAGGAGAAGAAATAGACTATGCGGGTTCTGAAGCCAATGAGGGCGGAGTTCTAGCAAGCGTAAATATGAATCATAAAGCGTTAGTGGAAAAGCTTCCAAACCGAGAGAATGAGATTCACAACTAAATGTTAGCAGAATACGAAGTCTAAAAACATGGACACTTTGGATTTGCTACTGTTCCAGTGCTGAAACTAAAAACAACCCGAGAAGAGGAATGCGATGTTAACATCAGTGTTAATATAATCATCTCAAAACCAGCAACACCAATGTCTTGAAAATTGACGCAATTTTATCAATGAGACATGATTCATGACGGAGAAATCTTGCCAAATGTGTTGCCGTATGGAGGGACTGAGAGTAGCAATTGCGAAGTCCCAAAGAATAGTACTGCTACTTAATTCTCACAACCTGCTTGTTTTAGAGAGCTTTTCTGAACACTTAAAGAAAAaggatgttaaaaaaatgactgGTGCATATTCACAAAGACTGGTAAAATGGATTTCATTTTATGTTACTTTTATATAGCCGTACGTGCTGTACATGGTGGCAGGGTATGTTTCCCATTTTGAACGTAACAATGGTAATAATGGGGTTTTCTTGGTAATTTCAGTTATATCCTGATCCATGTAAAAGGtgcacaaatatttttcttaaccATCCTGTTGAGGCATCTATTATACAGGTATTGAGATTTCAAAACAATGCTCATTAGGTACATTgtatagttatttaatttgataatatTACTGTGATCAGGTtggtatttaaataatgtctttggatttgaaaaaaaacatctcaaacaATAGTGTGACCAAACACTgatagttttcattcagctagACTATAGAAGGTTAAAATATAATactcttatatatttttagatttatcTTAACCGTGGGTGCACAGTTTCATTAAGTTAGGATCATGAATAGGGGAGACccaaatttaatataaataaatgacttaaaacaaactaattgtAGTTCTTTGTTTAGTAGTGTATGACTTCCtttgaggatttatttttcttgtaaatattaACTTCAAATGAAACTGCCAGATTTGGTAGAACTTTAGTATAGTAACTGGGTCTTAAgaaatgtgtgttatttatatacCATCTATACCaatagaataatttaatttttagaaTTGATTTAAGGAGGTTTGcttatgaaatacaaattgaaaacaggTTTAACTTTGCCTTGAATAGTTCTTATGACTAATATTGCTGCAATTGCGCACATTCACTGTGATAGTTTTACATGCTGTATGCATTTCTAAATGGCCTATTTTTGTATGAAcatgtgtggtttgtgtgaGCAGATATAAGTACTTATGTTCTAATAGGTTGTATATACAATGGTGTTTGCCTTCTTTTGtctactttttgtgtgtgttaatttaaaCGGTATGCATGGAATCATGAGTTAATGCTGTAAACTAAGCCTAAGTGATAGATAACTTTCTCCATTAATTGTTTGAATACTTACTGCATGCTTAATGAAGTCAGTCTTACAGTGTGTTAAGTTTTCTTTCTGCAagggttaaaatacatttttagagaTGATGTTTAGGAGGGTTCCATTATTAAATTAAGACTGAAGTtcttaatcaatatttattgtCAACAGATGTGCTTTCAAAATGACAATTCAACCTTACTTTCATTAACTACACCAGTTTTATTTGTGGTGGTGATAGTTTTCTATTGAATTGTGAAGAGCATTGTATcctaaacatgaaaatgaaaataatgtattttttgtttgggggaaaatggtttgaaataaaaatgttcaattcTCTTGCTAGTTATTTCCATTTATGGATATATATTACTAATGCTAATAAAATAGTACACATCTAGTGTataacacagtgcagtgtacagtaaGGAAAGGAATTACAAACTAGTTAAAACATACTATAG

Function

GO:

id name namespace
GO:0046854 phosphatidylinositol phosphorylation biological_process
GO:0006021 inositol biosynthetic process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0046872 metal ion binding molecular_function
GO:0052832 inositol monophosphate 3-phosphatase activity molecular_function
GO:0052833 inositol monophosphate 4-phosphatase activity molecular_function
GO:0008934 inositol monophosphate 1-phosphatase activity molecular_function

KEGG:

id description
K15759 IMPAD1, IMPA3; Golgi-resident PAP phosphatase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU42135 lncRNA downstream 178525 17430306 ~ 17434591 (-) True G33637
TU42087 lncRNA downstream 286658 17325269 ~ 17326458 (-) True G33603
TU42067 lncRNA downstream 292971 17315548 ~ 17320145 (-) True G33586
TU42065 lncRNA downstream 297686 17313339 ~ 17315430 (-) True G33584
TU42060 lncRNA downstream 309420 17303458 ~ 17303696 (-) True G33579
TU42171 lncRNA upstream 2069 17623960 ~ 17624226 (-) True G33665
TU42194 lncRNA upstream 121271 17743162 ~ 17773325 (-) True G33686
TU42271 lncRNA upstream 557198 18179089 ~ 18198157 (-) True G33758
TU42278 lncRNA upstream 593717 18215608 ~ 18216742 (-) True G33765
TU42333 lncRNA upstream 763061 18384952 ~ 18386998 (-) False AMCG00019396
AMCG00019377 mRNA downstream 127017 17481323 ~ 17486099 (-) True AMCG00019377
AMCG00019379 mRNA downstream 135359 17459764 ~ 17477757 (-) True AMCG00019379
AMCG00019381 mRNA downstream 172796 17438188 ~ 17440320 (-) True AMCG00019381
AMCG00019378 mRNA downstream 188452 17422668 ~ 17424664 (-) True AMCG00019378
AMCG00019380 mRNA downstream 191632 17414206 ~ 17421484 (-) True AMCG00019380
AMCG00019391 mRNA upstream 185564 17807455 ~ 17840411 (-) True AMCG00019391
AMCG00019390 mRNA upstream 275300 17897191 ~ 17911523 (-) True AMCG00019390
AMCG00019392 mRNA upstream 527596 18149487 ~ 18165134 (-) True AMCG00019392
AMCG00019396 mRNA upstream 762976 18384867 ~ 18441981 (-) True AMCG00019396
AMCG00019399 mRNA upstream 960959 18582850 ~ 18590919 (-) True AMCG00019399
TU41832 other downstream 1891664 15692482 ~ 15721452 (-) True G33381
TU41680 other downstream 2621120 14951842 ~ 14991996 (-) True G33259
TU41560 other downstream 3054826 14491891 ~ 14558290 (-) False G33163
TU41559 other downstream 3120898 14491891 ~ 14492218 (-) True G33163
TU41485 other downstream 3947886 13662116 ~ 13665230 (-) True G33106
TU42573 other upstream 1820504 19442395 ~ 19448573 (-) True AMCG00019419
TU42823 other upstream 3121639 20743530 ~ 20765496 (-) True AMCG00019446
TU43148 other upstream 5525970 23147861 ~ 23199608 (-) True G34470
TU43838 other upstream 11896105 29517996 ~ 29521984 (-) True G35067
TU43847 other upstream 11923340 29545231 ~ 29550162 (-) False AMCG00019556

Expression Profile