RNA id: AMCG00019385


Basic Information

Item Value
RNA id AMCG00019385
length 2328
RNA type mRNA
GC content 0.38
exon number 6
gene id AMCG00019385
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 17760073 ~ 17764666 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCCTCTTCAGGATATCTTGTACAACCTAGTCTCCTGCACTAAGCAGACACGATGATTCTTAGCATTGCATTGATCTGGGGATTTGTAGTTGGGCTTTGTTGCTGCTTGTGGCTTATTCTGGGGATCCGCAGAAGGCGTCCAGGAGAGCCTCCAGTAGAGAATGGTCTTATCCCATATCTTGGATGTGCACTTCAGTTTGGTGCTAATCCTCTTGACTTTCTCCGAAGTCGGCAAATGAAGTACGGGCACATCTTCACATGCAAGATTGCAGGCCAATATGTTCATTTCCTCACAGACCCTTTCTCATATCATGCTGTCATCCGCCAGGGAAGGCATCTGGACTGGAAAAAATTTCACTTTTCTGCCTCTGCCAAGGCATTTGGACATGAAAGCATGGATCCCAGTGATGGCTACACCACAGAAAACCTGCACCAGACATTTATCAAAACAATGCAGGGGGACGCCCTGCCATCTCTCATAGAAAACATGATGGAGAACCTTCAGTGTGTTATGCTGCAgtcaaacacactgaaaatcaaCTCAAAAGACTGGGTCACAGAAGGTATCTTTGCCTTCTGCTACAAAGTGATGTTCGAGTCTGGCTACTTAACACTCTTTGGCAAAGAGCTCAGTGCTTATGAAGACAAAACCCTTGCCAGGCAGGAAGCTCAAAAGGCACTGGTTCTGAATGCTCTGGAAAATTTCAAAGAGTTTGACAAGATCTTCCCTGCTCTTGTCGCTGGACTCCCCATTCATGTTTTCAAGAGTGCTCATAGTGCTCGAGAAAACCTCGCCAAGACCCTTCTCCATGAAAACCTTAGCAAAAGGCAAAatatttctgatttaatttcccTCCGGATGTTTCTGAATGACACCTTATCCACCTTTAATGATATGAGTAAGGCACGAACCCATGTAGCTTTGCTATGGGCATCACAAGCCAACACATTACCAGCCACGTTCTGGACTTTGTTCTATTTGATCAGGTGTCCTGAGGCAATGAAAGCCGCCAGTGAGGAAGTGAAGAGGACACTGGAGAAATCTGGTCAGAAAGCTAGTTTAGACGGAAGCCATATTTTCTTGAAGAGAGAGCAGTTGGATGACATGCCCATTCTAGatAGCATCATCAAGGAATCCATGAGGCTATCTAGTGCATCCCTAAATATCCGAGTTGCCAAGGAAAATTTCTTACTACACTTAGATAACAATGAATCCTACGACATTCGTAAAGATGATGTTATAGCACTATATCCACAACTACTCCACTTTGATCCAGAAATTTACGAAGACCCACTGACATTCAAATATGACAGATACCTGGATGACAATGGACAAGAGAAGACATCCTTTTTCAGAAATGGTCGCAAACTAAGATATTACTACATGCCTTTTGGCTCCGGAGTGACAAAATGCCCTGGGAGGTTTTTTGCCGTACATGAAATCAAACAGTTCTTGTCTCTGCTGCTCTCCTACTTTGACATGGAACTTGCAGACCCACATGTGAAAATCCCTCAGCTGGATCAATCTCGAGCTGGACTGGGAATTTTGCAACCGACCTATGATGTAAATTTTAGGTACAGAATGAAGAacttataaaaaatatacatgtatataaactaTTTTGTTCTATAGCTGGattgtaaatactgtatattaaagtTATAACTGCATAATAACCATGTACATAAACTATGTGtgcttttatatttgtttattattatttgtttttcaattgtgATTATTAAAGACTGTATATTGATTACTCCTTATGAAATATTCTTAGCAGTTCTACAGTTAAGCTTTTATGGcctataataaatgtataaaacttgTATAAACtagcatttaaacaatgtaaaagtgTATCTCTGGGAAATATAGGAAATTGTATGAGTTCCCCATTGCAGAGCTTTTTTAGCATAAGCATgaaaactgtttaatttgaaataacaaCCTGtttagataaaataaaacaccaagaaaaaactaaagcatTATAAGTAATCTAAATGCAAAtgtagagaaagagaaagacacatACTTTACTGTGCAAACAATATTGGTTTTTGAACACCACACTACATACTATagatacttttctttattttataattaacaataataaaaagctatgtttttgttttttcacccacgattcaaatgcttttacaaatgcttttcaatattttcattacattaaaattgcttttgtactattttattaaaagcaaaactgaTTAACAGCTGTAgcacatttttatgtaatgcttattacattttccatatttgattatttactATACATATCTTAAACTATTATGAAGAGAC

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen molecular_function
GO:0004497 monooxygenase activity molecular_function
GO:0005506 iron ion binding molecular_function
GO:0020037 heme binding molecular_function

KEGG:

id description
K00489 CYP7A1; cholesterol 7alpha-monooxygenase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU42143 lncRNA upstream 307414 17449320 ~ 17452659 (+) False AMCG00019376
TU42132 lncRNA upstream 327445 17430953 ~ 17432628 (+) True G33634
TU42100 lncRNA upstream 335175 17422624 ~ 17424898 (+) False G33615
TU42262 lncRNA downstream 378830 18143496 ~ 18144704 (+) True G33750
TU42312 lncRNA downstream 620218 18384884 ~ 18389982 (+) True G33794
TU42313 lncRNA downstream 630735 18395401 ~ 18395619 (+) True G33795
TU42314 lncRNA downstream 634350 18399016 ~ 18399743 (+) True G33796
TU42319 lncRNA downstream 666698 18431364 ~ 18438265 (+) True G33800
AMCG00019387 mRNA upstream 21421 17724423 ~ 17738652 (+) True AMCG00019387
AMCG00019388 mRNA upstream 51458 17707530 ~ 17708615 (+) True AMCG00019388
AMCG00019382 mRNA upstream 123636 17628392 ~ 17636437 (+) True AMCG00019382
AMCG00019376 mRNA upstream 307420 17449351 ~ 17452653 (+) True AMCG00019376
AMCG00019375 mRNA upstream 344376 17385850 ~ 17415697 (+) True AMCG00019375
AMCG00019384 mRNA downstream 18668 17783334 ~ 17793587 (+) True AMCG00019384
AMCG00019386 mRNA downstream 34939 17799605 ~ 17804445 (+) True AMCG00019386
AMCG00019389 mRNA downstream 414583 18179249 ~ 18207126 (+) True AMCG00019389
AMCG00019394 mRNA downstream 466549 18231215 ~ 18239613 (+) True AMCG00019394
AMCG00019393 mRNA downstream 493143 18257809 ~ 18296221 (+) True AMCG00019393
TU41862 other upstream 1678130 16043942 ~ 16081943 (+) True G33406
TU41707 other upstream 2590232 15164348 ~ 15169841 (+) True G33283
TU41554 other upstream 3273367 14439253 ~ 14486706 (+) True G33159
TU40734 other upstream 7350576 10404639 ~ 10409497 (+) True G32539
TU40438 other upstream 8131411 9369898 ~ 9628662 (+) True G32293
TU42780 other downstream 2842808 20607474 ~ 20610889 (+) False G34170
TU42783 other downstream 2842808 20607474 ~ 20610889 (+) True G34170
TU42785 other downstream 2842808 20607474 ~ 20610889 (+) False G34170
TU43058 other downstream 4850957 22615623 ~ 22625205 (+) False AMCG00019475
TU43194 other downstream 5907459 23672125 ~ 23695801 (+) True G34511

Expression Profile