RNA id: AMCG00019386



Basic Information


Item Value
RNA id AMCG00019386
length 710
RNA type mRNA
GC content 0.47
exon number 5
gene id AMCG00019386
representative True

Chromosome Information


Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 17799605 ~ 17804445 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CACTCTATCCCAAGCTTTATCCAGAACTCTCAGAATTCATGGGTCTAAATCTCAGTGACGATGCCCTACGCCAGTGTTCTGCTGTCGTTCCCATTGAAGACACTTCTGGGCAAATAGTTCCAAAGCCATCTGCTCTAAATTACATGACAGCCCCAATTACAGGGAATAATGTGGGAGTCCTCAGAGCAGAAATCAAACAGGGAATCAGAGAGGTGATCTTGTGCAAAGACATGGAAGGAAAGATAGGAATGCGCCTCAAATCAGTGGATAATGGTGTGTTCGTTCAGCTTGTCCAAGCGAACACTCCAGCCGCCTTGGCCGGGTTGCGTTTCGGAGATCAGCTGCTTCAGATCAATGGGGAGAACTGTGCCGGCTGGAGCACTGACAAGGCCCATGCGGTGCTCAAAAACGTTCCTGCGGAAAGGATTGCTGTCGTTGTCAGGGACAGACCTTTTGAGCGTACTGTTGTTATGCACAAAGATTGCAACGGACAACTGGGCTTTGTTTTCAAGAAGGGAAAGATAACCTTCATTGTTAAGGACAGCTCTGCGGCCCGAAATGGGCTTCTCACTGATCACCACATTTGTGAGGTGAATGGCCAGAATGTCATTGGACTAAAGgATACTCAGATCACTGATATACTGAATTCATCTGGGAGTGTAATAACAATAACTGTTATGCCTTCATTAATCTGTCAGCATATGATGAAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU42143 lncRNA upstream 346946 17449320 ~ 17452659 (+) False AMCG00019376
TU42132 lncRNA upstream 366977 17430953 ~ 17432628 (+) True G33634
TU42100 lncRNA upstream 374707 17422624 ~ 17424898 (+) False G33615
TU42262 lncRNA downstream 339051 18143496 ~ 18144704 (+) True G33750
TU42312 lncRNA downstream 580439 18384884 ~ 18389982 (+) True G33794
TU42313 lncRNA downstream 590956 18395401 ~ 18395619 (+) True G33795
TU42314 lncRNA downstream 594571 18399016 ~ 18399743 (+) True G33796
TU42319 lncRNA downstream 626919 18431364 ~ 18438265 (+) True G33800
AMCG00019384 mRNA upstream 6018 17783334 ~ 17793587 (+) True AMCG00019384
AMCG00019385 mRNA upstream 34939 17760073 ~ 17764666 (+) True AMCG00019385
AMCG00019387 mRNA upstream 60953 17724423 ~ 17738652 (+) True AMCG00019387
AMCG00019388 mRNA upstream 90990 17707530 ~ 17708615 (+) True AMCG00019388
AMCG00019382 mRNA upstream 163168 17628392 ~ 17636437 (+) True AMCG00019382
AMCG00019389 mRNA downstream 374804 18179249 ~ 18207126 (+) True AMCG00019389
AMCG00019394 mRNA downstream 426770 18231215 ~ 18239613 (+) True AMCG00019394
AMCG00019393 mRNA downstream 453364 18257809 ~ 18296221 (+) True AMCG00019393
AMCG00019395 mRNA downstream 533106 18337551 ~ 18378055 (+) True AMCG00019395
AMCG00019400 mRNA downstream 712694 18517139 ~ 18525098 (+) True AMCG00019400
TU41862 other upstream 1717662 16043942 ~ 16081943 (+) True G33406
TU41707 other upstream 2629764 15164348 ~ 15169841 (+) True G33283
TU41554 other upstream 3312899 14439253 ~ 14486706 (+) True G33159
TU40734 other upstream 7390108 10404639 ~ 10409497 (+) True G32539
TU40438 other upstream 8170943 9369898 ~ 9628662 (+) True G32293
TU42780 other downstream 2803029 20607474 ~ 20610889 (+) False G34170
TU42783 other downstream 2803029 20607474 ~ 20610889 (+) True G34170
TU42785 other downstream 2803029 20607474 ~ 20610889 (+) False G34170
TU43058 other downstream 4811178 22615623 ~ 22625205 (+) False AMCG00019475
TU43194 other downstream 5867680 23672125 ~ 23695801 (+) True G34511

Expression Profile