RNA id: AMCG00019392


Basic Information

Item Value
RNA id AMCG00019392
length 846
RNA type mRNA
GC content 0.46
exon number 8
gene id AMCG00019392
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 18149487 ~ 18165134 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCTGACAATATGATTGAAGAATCTGATTACTATCCTGATAAGGATGATTTGGAGTGGGGATATGAAGAAGGTGTAGAATGGGGTCTGTTGTTCCCTGAAGCAAATGGAGAATATCAGTCTCCCATAAACCTCAACTCCAGGGAGGCCAGGTATGACCCCAAACTCCTGGAAACCCGCCTGAACTCAAACTACGTGGTTTGCCGTGACTGCGAAGTCATTAATGACGGGCACACTGTACGGATACTGCTAAGGTCAAAATCAGTGGTAACAGGAGGCCCTTTACGCAGTGACCATGAATATGAGCTACACGAGGTTCGCTTTCACTGGGGAAGAGAAAACCAGCGAGGCTCTGAGCACACAGTTAATTTCAAAGCTTTTCCTATGGAGCTTCACCTAATTCACTGGAACACTGCGCTGTTCAGCAATATTGACGAAGCCCTGGGGAAGAGAAATGGGATTcttattattgctttatttgtacAGATAGGAAAGGAACATCTAGGACTGAAGGCTATTACAGAGGTCCTTCAGGATATACAATACAAGGGGAAGACAAAACTCATTCCGTGCTTTAATCCCAACACATTGCTGCCAGACCCTCTCCTTCGGGATTATTGGGTTTATGAGGGCTCTCTCACCATGCCTCCTTGCAGTGAAAATGTCACATGGATATTATACCGTTATCCTTTGACGGTGTCACAGATGCAGATAGAGGAGTTTCGAAGACTGAGATCCCACATTAAAGGTGCCGACCTGGCTGAGGGCAATGATGGGATGTTGGGAGACAACTTCAGGCCTACGCAGCCCCTGAGCGATAGAGTAGTCAGAGCTGCTTTCCAATAG

Function

GO:

id name namespace
GO:0021549 cerebellum development biological_process
GO:0006730 one-carbon metabolic process biological_process
GO:0036269 swimming behavior biological_process
GO:0009790 embryo development biological_process
GO:0008270 zinc ion binding molecular_function
GO:0004089 carbonate dehydratase activity molecular_function

KEGG:

id description
K01672 CA; carbonic anhydrase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU42194 lncRNA downstream 376162 17743162 ~ 17773325 (-) True G33686
TU42171 lncRNA downstream 525261 17623960 ~ 17624226 (-) True G33665
TU42135 lncRNA downstream 714896 17430306 ~ 17434591 (-) True G33637
TU42087 lncRNA downstream 823029 17325269 ~ 17326458 (-) True G33603
TU42067 lncRNA downstream 829342 17315548 ~ 17320145 (-) True G33586
TU42271 lncRNA upstream 13955 18179089 ~ 18198157 (-) True G33758
TU42278 lncRNA upstream 50474 18215608 ~ 18216742 (-) True G33765
TU42333 lncRNA upstream 219818 18384952 ~ 18386998 (-) False AMCG00019396
TU42360 lncRNA upstream 441007 18606141 ~ 18615254 (-) True G33830
TU42512 lncRNA upstream 1129678 19294812 ~ 19301547 (-) False AMCG00019417
AMCG00019390 mRNA downstream 237964 17897191 ~ 17911523 (-) True AMCG00019390
AMCG00019391 mRNA downstream 309076 17807455 ~ 17840411 (-) True AMCG00019391
AMCG00019383 mRNA downstream 527596 17613116 ~ 17621891 (-) True AMCG00019383
AMCG00019377 mRNA downstream 663388 17481323 ~ 17486099 (-) True AMCG00019377
AMCG00019379 mRNA downstream 671730 17459764 ~ 17477757 (-) True AMCG00019379
AMCG00019396 mRNA upstream 219733 18384867 ~ 18441981 (-) True AMCG00019396
AMCG00019399 mRNA upstream 417716 18582850 ~ 18590919 (-) True AMCG00019399
AMCG00019398 mRNA upstream 429849 18594983 ~ 18605836 (-) True AMCG00019398
AMCG00019404 mRNA upstream 656029 18821163 ~ 18833805 (-) True AMCG00019404
AMCG00019403 mRNA upstream 823772 18988906 ~ 19004537 (-) True AMCG00019403
TU41832 other downstream 2428035 15692482 ~ 15721452 (-) True G33381
TU41680 other downstream 3157491 14951842 ~ 14991996 (-) True G33259
TU41560 other downstream 3591197 14491891 ~ 14558290 (-) False G33163
TU41559 other downstream 3657269 14491891 ~ 14492218 (-) True G33163
TU41485 other downstream 4484257 13662116 ~ 13665230 (-) True G33106
TU42573 other upstream 1277261 19442395 ~ 19448573 (-) True AMCG00019419
TU42823 other upstream 2578396 20743530 ~ 20765496 (-) True AMCG00019446
TU43148 other upstream 4982727 23147861 ~ 23199608 (-) True G34470
TU43838 other upstream 11352862 29517996 ~ 29521984 (-) True G35067
TU43847 other upstream 11380097 29545231 ~ 29550162 (-) False AMCG00019556

Expression Profile