RNA id: AMCG00019396


Basic Information

Item Value
RNA id AMCG00019396
length 8999
RNA type mRNA
GC content 0.41
exon number 32
gene id AMCG00019396
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 18384867 ~ 18441981 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCCATCTATCCTATCAGGCTTAGGGAAAGCAGACTGAcatggaaagagagaggggaggagagagcagTGTTTCCATATGAGTGCCTACATTTATTTGGCTGTTTCAGAGAGCAGCTCTAAAAATACTCTGTTGGGCAGTCAGGTCCTGTATCGGGTTTAAGCTGAGTTAGCTTTTCAAAACTTTCAGTTACTGTTGCGTGCTGGGGCTTCGGACAGCAACGGGGGAATTTTATTGCTTTTCGTTCTCTCGTTGCTGAACTTGACAATCACTCCTCTGAGATTTCTGTATGGATGGGGGAGACTAATGACATGGCAGAAGATACAGATGGGAAACACATAGGAAACAAGAATGGGAAGAAAGGGGAAGGCTTGACTGGGAGCTCATTCTTCACCTGGTTTATGGTGATTGCTCTGCTCGGCGTGTGGACCTCAGTGGCAGTGGTGTGGTTTGACCTGGTAGATTATGAAGAAGTCCTCGGTAAACTTGGAGTCTATGATGCTGACGGCGATGGTGACTTCGATGTGGAGGATGCAAAAGTACTGCTAGGCAAGTGCACTCCTTCAGCATTGTTTTTGCGCTTGACCAAAGATGGCAGTAATGAAAATTTGGATTCCCTTGAGGAAGTCCTTAATATTTTAGCAGAGGAAGGCTCTGATTGGTTTTACGGCTTCCTCACCTTTCTCTATGATGTAATGACTCCTTTTGAAATACTAGAAGATGAAGAGAGTGAAGCCGCAGAGGATGTTGCGGATGAAAAGCCGGGAGAAGTTGCTAAGAAAAAAGTCAAAACGAAAGCTCACCATTCACCGAAAGACATTGGAAAAAGGTTGAGGGACGTGTTAAGAGAACAGTTGAGGATAGTACGGGACAAGGTCCaagcaaaaaagaaaggaaagattTCATTGTTAAGGGTAGAAGACAAGAAAGCCAAGGCTTTAGagcaggagaagaaggagaaaaaggaaGCCGCTAGGGCAGAAAAACGGAAAAAGGAGGCCGCCGTGAAGAAAGAGAAAGCCAAGGAGAAAACGAAGACCAAGGACAAAGCGGAAACAGAGAAGAAGGCCAAACCCAAGGAGAAAGACttgaaaaaggagagagaacaCAAGAAGGAAAAAGCAGACAAGAAaaaggaggagaggaaagacaaggagaaaaaagaggaaaaaaaagtcaagaaggagaaaaaagaggagaaaaaggacaaggagaaaaaagacaaaaaggagATAGAGgacaagaaggagaaaaaagaaaaggagaaaaaagaggTGAAGAAAGATGAGGAGAAAAAGGATAAACctgaaaagaagaaggaaatggACAAAGGAAAAGAGAAGGCAAATAAACCAGCCAGCAAGAAGGCAGATGCAGCCCCTAAAGACGTGAAAAAACCTGACAAACCTTCTAAAGgattaaaggaaaaacctatTGCTGTGGAGTCAAGGTCACTGGGAGAAGATGAAGTGGCGCAGCCCCCCGAGGAAACCGTTCCTGAGCCTGAGCTAGTGATGGAGGAAGAAATCCAGGCAAGTGTGGCTGAGCAAGACTCGGAGCCTCCTCCCGATGAGGCAGAGGAAGAACAGGAGCCTGAGGAAGAAGTGGCAGGGGACACTGAAATagagcaggaagaggaggaggagcaggaacAAGTCCTGGAGCAGGAGGCTGTAGCAGAAGAGTTCCAGGCTGAGGAGGAAGTAGAGCTGTGGGATGAACTCCAAGACACTGAAGAACTAgcagagcgggagagagaggaagaggaacagCCTTACGAGGTGGAAGAGGAGGACAGCGTGGAAGAAGAGGACATAGTGGAAGAGGAGCTCCCCCTGGTGGATGACAACACGGAGTATGCTCCAGAAGAAGAGGAAAGACTCGAGAAGGATGCCCCCGTAGCGGAAGAAGAGAGAATGGAAGCAGGGGttgaggaggaagaagaggaggaggaggcagcagAGGCTCCGGTTGAAGATGAGGCGGACGTTTCTTTGGAAGAGGAAGGAACAGAGGAAGTGGAGGAGCTTGCAGCCCCTGTGGAAGAGGAGATGGTAGAGGAAACTGTCCCTGAGACTCATGAGGAACCAGAGGTGAAAACCGAAGAGTTAGATGAAGCTGTGGAGGCAGACGGAGAGGAGGACCAAGGCGATCAAAACGAGCCATCTGTGGAGGTGGAAGAGGAGTCTTACCAAACTGAGGAAGCTCCTGTTGAAGATGcTACTTCTGAgcctgaggaagaggaggagaccCCACCAGCAGAAGAAGAATATTCAgATCCTGAGAAAAGTGAATACCAAGACCAGCAGTTTGAAGGTGAAGAGTCACCGAGCGAAGAATACAGTGAAGATGTCCAAGATGCTTCCTCAGTCTCGGAGAGTGAGGACGAAGAGCCAGAGGAAGAGGACTTTAGTTTAGaggaAGATACCCCTGAAGATACAATAGACACACAAGGGGAGTCTGTTTTGGATACAGAACCCGAGCATGGAGAAGAGGAGTCACGGGATGCAGAAGAGAGTATGCTTTCTGAGCCAGAGCTGTCGGAGGAGGATGCAGAACCTCAGGAACTAACTACTGAAGACATTTCTGAGCCAGAACCTGATATTCACTCAGAAGTGAATGCTGAAGatCATGACAATGAAGAATCTGCCCCTGAGGAGGCTGTGCAAACAGAAGCAGTTGAACCACAAGGTGAAGAAAAGCCAAAGGAGAAAGcaaagaagaagaagaagccaAAGCTCTTGAATAAATTTGATAAAACTATCAAAGCTGAGATAGACGCTGCAGAAAAGTTACGGAAGAAGgGAAAAGCAGAAGAGGCACTCCAAGCTTTTGAGAGTCTTGTCAGCAAATACCCCCAGAGTCCAAGAGCTCTATACGGAAAGGCACAGGCTGAGGATGACCTGGCCGAGAAGAAACGAAGCAATGAGGTTCTTCAGAGGGCCATTAACACCTTCAGAGACGCCGCAGACCTGCCCGGTGCCCCGGCTGATCTGGTGAAACTGGCACTCAAGCGACGAGCCGAGAGGCAGCAATTTCTAGGTCGCATGCGAGGTGCCCTGGTTACACTGGAGAAGCTAGTGCAGCTTTTTCCCGAAGACATCTCCCTGAAGAATGACCTGGGAGTGGGTTTTCTGCTCCTGGGAGACAACAAAAATGCCAAGAAAGTCTATGAGGAGGTCTTATCTATAGTGCCAAATGATGGCTTTGCCAAGGTTCACTACGGTTTCATCCTTAAAGCTGAGAACAAGATAGTGGAAAGTATCCCGTACCTGAGGGAGGGATTAGAATCTGGAGACCCGGGCACGGACGATGGCAGGTTTTATTTCCATCTGGGAGATGCCCTGCAAAGAGTTGGAGATAGCAATGCCTACAAGTGGTATGAGATTGGACACCAGAGAGGACATTTTGCGTCAGTGTGGCAGAGATCTCTTTACAATGTGAATGGACTGAAAGCTCAGGCTTGGTGGACAGCTAAAGAAACTGGTTACACAGATCTTGTAAAGACTCTGGAAAGAAACTGGAAGATGATTCGGGATGAGGCCCTGACCATCATGGACTCTGAGAGTGGGCTGTTCGCTGCCGAAGATGaaaacctgagagagaggggggagtgGGGTCAGTTCACATTGTGGCAACAAGGtaaaaagacagagaaatcCTGCCTAAAAGTTCCCAAGACCTGCGCTTTACTGGACCGCTTTCCAGAGGCAACGGGCTGCAGGAGGGGACAGATCAAGTACTCTGTAATGCAGCCTGGGACGCATGTATGGCCTCACACAGGGCCCACAAACTGTCGCCTGAGGATGCATCTGGGTCTGGTCGTTCCCAGGGAAGGATGCAAGATAAGATGTGCCAATGACACCAGGTTCTGGGAGGAAGGTAAAGTGCTTGTCTTTGATGACTCCTTTGAACATGAAGTTTGGCAAGATGCTGACAGCTATAGATTGATCTTCATTGTAGACGTTTGGCATCCAGAGCTGACTCCTTACCAGCGACAGACACTTTCCCCTATATAAAGCGTGGGATTGTTATTGCTAACCTCTCTCTGGCACCCTCCCACACACAAATGCAGACTCTGCTGTTAtggcttttattttacattgagtTTGTTTTACTAGCATAATTGTTAAAATAACAGCCATTGCAGCCGCCCACACAAAGGAAATCAAAGGGATCACGTTTTGGTGACAAGAGATTACTCTTCATACAGTTAAGAGAAGCACATATAGAACAGAAATTCCTGTATTGCACAGACAGCTGCACTGTTACAACCTCGGATATGTggtacaaacaacaacaaccaccaaacaaacacaaagccaaTACAGCCGGTCTCAATTTCATCtggaaaataatagaaaattaaattaaaaaattaccTGTTAAAGACTGTGTAATACATGCTCTCAGGGGGAAGAGAGAACTCGTTCTGCAGTTTTATGTAGTTATTTCCAGGACCTGTTTTTAAGAAGATGTGCCTTCCAAAACACAGATGCTGCTATGATAATTGGGGGTCTTTTCTCTGCCTTAAGCTGTAACGAGTTGCACCTGCCTCCGAGCACACACAGCTCCATTCAAAATCTTTTCAAACAGGCAGTGAGGGATCCAAAGCTCAACGGCTGCCAGGAAAGCTGCTGTTGCTCAGTCCTGGCTCTGCTTTCAGAGTGGGTGGGTCTTCAAACATTCGGAAAACGGCTGCTTAGCTGTCTGTGCAATATTATAATGTGAGAGAGAGGGCTACAAGGCACAGTTAACAAGGTGTTGAATTATTAATTCTAAATAGTGACCTTGTTTGATGAATGCATTTAGCAAACCTGATATTATAAGTAGTGAAACACTGCACATTTAACCTGTCACTGGAGGGCagcttttttcttctgttttctttgagAATTCAGTCAATGGTCATGCAAGTGATGTAACCAAGtgtcattgtgttacagagCCCGTGGAGATGTGTCAGTAATCCAAAACCACTGATTGGTTAGTTAGAATGCCaataatgattttgtttacattgcccACCAGTCATTTACTaccaaatcatttaaatagtttCATGTAAGTTTCCTTgtgaacatttattattatcgCTGAGTAGAATATGTATGAAAATCATTTAACCTTAAACATAGTACATTAgttatgctttttgtttataGTCTAATGAAAATGTTGccgaaaatatatatttcagcttGGATCAGCAATATATATGACTCATCCAgtaatcacaaaatacaaacacagttGTTCTTAATTTGTACAACAGTACTAATTTCCATTCTGGAAATCTGGCATCACATTCTGAATTGGTACTTTGCGATTTGTACTTTGATTTAACCTGTGTCCTTTTTCAGCTGTGAATCAGGGTCATGTTGATTTGAcctatttaataatttacattattgtctgatttttgttttcaatattcagTATGTTTCAGCCACAAACAATCATGCTTCTGTATTGGGAATTGATAAATGTTTacttgaagtaatttgattgaATGGACATTGATGCAAACTAGaatgagaaaaactaaaaaatcctTTTTGAAGGAATAGTCCTCGAACGTTCCTTTAATGTACTTTCAGAAACCTCTGAATATCTACCCAAACCTTAACAACTACATTGACTGTGCCTGAGATTATTATAACCATATTTATGAAGACTGATTGTAATGATCTATtgaaaaaatcaacaacactgCTTTGAGAATATCCCGCGGTCTAGATGGGACAGTGAATGACAAGCAAAGCAATCTTCTCGGCTGAAACAAAGTGTGACTCCTATACATAATATATGTTGATTAATATGAACAGCAATTATAAGAGCTTTTGTATAGAACCTTGagattgtaatttgtaaatcattAATATCAGCTATGGAGGTgcttaacatgtattttatacaggCACACAATCTGTGTTAAAAAATCAAGTAAAGTGACACCTcacttattttcctttataattatttgagtgttatttgttttgttaggtttctttttttctgctggTTTTATTATACTTCCATAAAGTCATATCCAAATTACAATCATGTGGAATGTTAATGTGTATAAAATGTTCAATATCACTTTTATGTATTCCCCCTTTCTTTTATGTTAACTGCTGCAACAAGCCTGCTAAATGCTAtttaagcatttttgttttcttgtcttgcACTGAGTAATGTCACCTCGGCATGATTCAATGACTGAATTACGCTTCTGCTACAAAGGAAATGAAGTAACAGTTGATATTGAAATcactattgtttgttttattgttttttaaactgataacagaatactgtgctgtgttttatgtactatttttgaaatatgtatgaaTATGTGCAAATGCTTTAGATAAGAAGTTACATATGCTTATGAACAGAAATTGATAGATAGTAGGATATGTAGTCAGACAGACTGATGCAATAAATCTGACCCAAAACAGAACTGCAACCTTTTGATCCACACATTAGGAACTGCTTTTAGGATGTGAGCTCCCCAAACACCAATACAAGATCAGTACTGAGCCATGTGTCACGAAGGACTTTGCAGACTGTAGCACAACTTTTCAGTGAAGAGAACAGTTCCACTATCATGGACTAAGTTTAATGGACTTTCAACATCTCCAATTCGGCCACTGTAAAAGGCTGGTCATGtggaatagaaaaataatttctgcaAGCTATCATGAGGTCCAAGTTCAACATATATCTTTCCTACTGTAGTCGACAGTAGACCGCTTTATCCTTGACCCTCATCATCTCCAGTCTCTTCAGTTCCTCCAAGTGGCATGTACTTACAAGCAGTTCTTTGCAGCATGATAGGCAAGCATAAGACCtgtattgaattatatttttgtaggACATggtgtacaaaatgtatatagaaTCTGCCAGCCTGGCTTCTGGGACATGTTTGTAAGAAACGTATAATAAAACCACCTGACGATGACATGTTTTATCAGAAGACAGCATTAAGAAACCCATCTTTATTTCAGACAGGGCACCATCCCTAGacataacatttcaatttacCTCATGCCCACATGCATGACTGCACTCTTGCACCTGACTGAGGACTTTAGAGATCATGTCAAGGAACGGGAGTACCTCAGAGATGGTTTGGCCAGGATGGCAGAGTTGTGTTGAGTTATTGAGTTGTGTACATGTCACAAAAGTGTGCTTACAGTACCAAGAcctgtaccaaaaaaaaaaacttctagcACCCATGTGACTACCTTTCATGATTCCAAATGAAGAAGGCAGTATTTCTGTGTGACAGAAGCTACAACACTGAACTCATGTTTCCTTTTAGCAGCTCTGTTACACTGCCCCGGTCGGGAAGGTGAATGTCACTGTATATGGAGGATAAGGGTCATGAAGTACACTATTTTCTAATAATACGtgtataatatgtaaaataatttgttgtGCTTTACCTGCtatatggaaaacatttttgtatttgatggcAAAGGGCATCAAATCACAGATAATGCTGTATACACCTCAGTGGAGGTTATTGAAAGGGATTGATAAAGGatataacaaaaccattaattaaaatggaaaatgactagtctttaattagtattttaagTGTTAGCTTCAGGTTACTGCTTAAATGAGCTTACAAGTTCTCTTAGTAACTATAATAGGTTCTCATTTTATTCCAACATGAGACGCAAATAGTCGTTATTAGGTCAGATTGCTTTCAAAGTGAACTATTGTGACACAGCTTGGGGGTTGTGTGTCTATGTCCAGGGAGCGGGTTGCCATATTTACACGGATCTCAGAGCTTCACCAAGACTTTAACAGCTGTTGAGGGGCTTACTGCCCTTCTGCGTACCGCCCATCACAGACTACCCCCTGCGCTGAGTTACACTGTGttgaatgtaaaatgcataattaaagaAAGGGAACCACTTCCAATTTCACAGTGAGTCGCTGTTGATTGtagaaacaaacatttcacacaTGTACATCTTTTTAATGGCGTGGTACCATTCTGTCATTCCTTATGAAAGGACTATATTCTCTGTAACATGAAATTCTTTATACAGTGTGTTGTTTCAATATAAAAAGaagctttattgttttatattttcattaaaccGATCATAACTATTCGTCCAATatagtcctttaaaaaaaaaattaagcaatAAGCAGACATGAGGTATTTGACCACTTTTCAGCTTCATCCCTCTGAATGACAGTTGCTTTTCATAGGTTATAGATTTACGCTGGGATATTGCCACTGGAGACTGCATGTGGGTGGCTACATTAACTATGCTGTACAATGTAATTAGTCTTGTAAGTTGCATGAAAAAGGCTCATGTTGCAAGCTGAAAGTGACCAGAAAATTAAACAAGTGGAAAGGCagtagatatatagatataactAATTGCATTTCCAAGGCAGTGCAATAGCTTCCCATGAATAAGTGAAATCAGAAGGCAGATGTACCTCAAACAGGGCTATAAATAGAGTATGGATTAGCATACAGAAGCAGGAGCCAATCACCTAGGTTCATGTCAAATATTGTACTTCAGACCATTTTCCCAATGTCATAAACACTGAAGAATCAGAGACAGTAATCCGTTGGATTTTCTTGTATTAATGTCTGAGATCACAACTCACTTCCCTTTCCCATTTTGGaatgataatgttttttattgtatattgtatttcttaagGTGCCTTAAGAGTGTGTACTGAATTACGTAGATATCTAGTAGGCATTTTAAGTGTACATAATATTTGGGGGATTTCTTAAATACAAGCCTCCGTGTATTCACTATTATTTGTAATCTATTGTCAAATTGATTCACTTTTAAAGTTATGTGTTATCATAGCTTATCTTCTCAATTTACAGATACTGTAACACAAATGTACAATTATATAGTTATgtttaataattgaaatgtCAGATACAGTTTAATAATGGATTATATGATGACATTATTGTTGATTTTTC

Function

GO: NA

KEGG:

id description
K00476 ASPH; aspartate beta-hydroxylase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU42278 lncRNA downstream 168125 18215608 ~ 18216742 (-) True G33765
TU42271 lncRNA downstream 186710 18179089 ~ 18198157 (-) True G33758
TU42194 lncRNA downstream 611542 17743162 ~ 17773325 (-) True G33686
TU42171 lncRNA downstream 760641 17623960 ~ 17624226 (-) True G33665
TU42135 lncRNA downstream 950276 17430306 ~ 17434591 (-) True G33637
TU42360 lncRNA upstream 164160 18606141 ~ 18615254 (-) True G33830
TU42512 lncRNA upstream 852831 19294812 ~ 19301547 (-) False AMCG00019417
TU42513 lncRNA upstream 852831 19294812 ~ 19301547 (-) True AMCG00019417
TU42514 lncRNA upstream 852831 19294812 ~ 19301547 (-) False AMCG00019417
TU42577 lncRNA upstream 1025095 19467076 ~ 19480968 (-) True G34006
AMCG00019392 mRNA downstream 219733 18149487 ~ 18165134 (-) True AMCG00019392
AMCG00019390 mRNA downstream 473344 17897191 ~ 17911523 (-) True AMCG00019390
AMCG00019391 mRNA downstream 544456 17807455 ~ 17840411 (-) True AMCG00019391
AMCG00019383 mRNA downstream 762976 17613116 ~ 17621891 (-) True AMCG00019383
AMCG00019377 mRNA downstream 898768 17481323 ~ 17486099 (-) True AMCG00019377
AMCG00019399 mRNA upstream 140869 18582850 ~ 18590919 (-) True AMCG00019399
AMCG00019398 mRNA upstream 153002 18594983 ~ 18605836 (-) True AMCG00019398
AMCG00019404 mRNA upstream 379182 18821163 ~ 18833805 (-) True AMCG00019404
AMCG00019403 mRNA upstream 546925 18988906 ~ 19004537 (-) True AMCG00019403
AMCG00019405 mRNA upstream 575374 19017355 ~ 19037399 (-) True AMCG00019405
TU41832 other downstream 2663415 15692482 ~ 15721452 (-) True G33381
TU41680 other downstream 3392871 14951842 ~ 14991996 (-) True G33259
TU41560 other downstream 3826577 14491891 ~ 14558290 (-) False G33163
TU41559 other downstream 3892649 14491891 ~ 14492218 (-) True G33163
TU41485 other downstream 4719637 13662116 ~ 13665230 (-) True G33106
TU42573 other upstream 1000414 19442395 ~ 19448573 (-) True AMCG00019419
TU42823 other upstream 2301549 20743530 ~ 20765496 (-) True AMCG00019446
TU43148 other upstream 4705880 23147861 ~ 23199608 (-) True G34470
TU43838 other upstream 11076015 29517996 ~ 29521984 (-) True G35067
TU43847 other upstream 11103250 29545231 ~ 29550162 (-) False AMCG00019556

Expression Profile