RNA id: TU42333


Basic Information

Item Value
RNA id TU42333
length 2047
lncRNA type sense_over
GC content 0.37
exon number 1
gene id AMCG00019396
representative False

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 18384867 ~ 18441981 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttatatttttgtaggACATggtgtacaaaatgtatatagaaTCTGCCAGCCTGGCTTCTGGGACATGTTTGTAAGAAACGTATAATAAAACCACCTGACGATGACATGTTTTATCAGAAGACAGCATTAAGAAACCCATCTTTATTTCAGACAGGGCACCATCCCTAGacataacatttcaatttacCTCATGCCCACATGCATGACTGCACTCTTGCACCTGACTGAGGACTTTAGAGATCATGTCAAGGAACGGGAGTACCTCAGAGATGGTTTGGCCAGGATGGCAGAGTTGTGTTGAGTTATTGAGTTGTGTACATGTCACAAAAGTGTGCTTACAGTACCAAGAcctgtaccaaaaaaaaaaacttctagcACCCATGTGACTACCTTTCATGATTCCAAATGAAGAAGGCAGTATTTCTGTGTGACAGAAGCTACAACACTGAACTCATGTTTCCTTTTAGCAGCTCTGTTACACTGCCCCGGTCGGGAAGGTGAATGTCACTGTATATGGAGGATAAGGGTCATGAAGTACACTATTTTCTAATAATACGtgtataatatgtaaaataatttgttgtGCTTTACCTGCtatatggaaaacatttttgtatttgatggcAAAGGGCATCAAATCACAGATAATGCTGTATACACCTCAGTGGAGGTTATTGAAAGGGATTGATAAAGGatataacaaaaccattaattaaaatggaaaatgactagtctttaattagtattttaagTGTTAGCTTCAGGTTACTGCTTAAATGAGCTTACAAGTTCTCTTAGTAACTATAATAGGTTCTCATTTTATTCCAACATGAGACGCAAATAGTCGTTATTAGGTCAGATTGCTTTCAAAGTGAACTATTGTGACACAGCTTGGGGGTTGTGTGTCTATGTCCAGGGAGCGGGTTGCCATATTTACACGGATCTCAGAGCTTCACCAAGACTTTAACAGCTGTTGAGGGGCTTACTGCCCTTCTGCGTACCGCCCATCACAGACTACCCCCTGCGCTGAGTTACACTGTGttgaatgtaaaatgcataattaaagaAAGGGAACCACTTCCAATTTCACAGTGAGTCGCTGTTGATTGtagaaacaaacatttcacacaTGTACATCTTTTTAATGGCGTGGTACCATTCTGTCATTCCTTATGAAAGGACTATATTCTCTGTAACATGAAATTCTTTATACAGTGTGTTGTTTCAATATAAAAAGaagctttattgttttatattttcattaaaccGATCATAACTATTCGTCCAATatagtcctttaaaaaaaaaattaagcaatAAGCAGACATGAGGTATTTGACCACTTTTCAGCTTCATCCCTCTGAATGACAGTTGCTTTTCATAGGTTATAGATTTACGCTGGGATATTGCCACTGGAGACTGCATGTGGGTGGCTACATTAACTATGCTGTACAATGTAATTAGTCTTGTAAGTTGCATGAAAAAGGCTCATGTTGCAAGCTGAAAGTGACCAGAAAATTAAACAAGTGGAAAGGCagtagatatatagatataactAATTGCATTTCCAAGGCAGTGCAATAGCTTCCCATGAATAAGTGAAATCAGAAGGCAGATGTACCTCAAACAGGGCTATAAATAGAGTATGGATTAGCATACAGAAGCAGGAGCCAATCACCTAGGTTCATGTCAAATATTGTACTTCAGACCATTTTCCCAATGTCATAAACACTGAAGAATCAGAGACAGTAATCCGTTGGATTTTCTTGTATTAATGTCTGAGATCACAACTCACTTCCCTTTCCCATTTTGGaatgataatgttttttattgtatattgtatttcttaagGTGCCTTAAGAGTGTGTACTGAATTACGTAGATATCTAGTAGGCATTTTAAGTGTACATAATATTTGGGGGATTTCTTAAATACAAGCCTCCGTGTATTCACTATTATTTGTAATCTATTGTCAAATTGATTCACTTTTAAAGTTATGTGTTATCATAGCTTATCTTCTCAATTTACAGATACTGTAACACAAATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU42278 lncRNA downstream 168210 18215608 ~ 18216742 (-) True G33765
TU42271 lncRNA downstream 186795 18179089 ~ 18198157 (-) True G33758
TU42194 lncRNA downstream 611627 17743162 ~ 17773325 (-) True G33686
TU42171 lncRNA downstream 760726 17623960 ~ 17624226 (-) True G33665
TU42135 lncRNA downstream 950361 17430306 ~ 17434591 (-) True G33637
TU42360 lncRNA upstream 219143 18606141 ~ 18615254 (-) True G33830
TU42512 lncRNA upstream 907814 19294812 ~ 19301547 (-) False AMCG00019417
TU42513 lncRNA upstream 907814 19294812 ~ 19301547 (-) True AMCG00019417
TU42514 lncRNA upstream 907814 19294812 ~ 19301547 (-) False AMCG00019417
TU42577 lncRNA upstream 1080078 19467076 ~ 19480968 (-) True G34006
AMCG00019392 mRNA downstream 219818 18149487 ~ 18165134 (-) True AMCG00019392
AMCG00019390 mRNA downstream 473429 17897191 ~ 17911523 (-) True AMCG00019390
AMCG00019391 mRNA downstream 544541 17807455 ~ 17840411 (-) True AMCG00019391
AMCG00019383 mRNA downstream 763061 17613116 ~ 17621891 (-) True AMCG00019383
AMCG00019377 mRNA downstream 898853 17481323 ~ 17486099 (-) True AMCG00019377
AMCG00019399 mRNA upstream 195852 18582850 ~ 18590919 (-) True AMCG00019399
AMCG00019398 mRNA upstream 207985 18594983 ~ 18605836 (-) True AMCG00019398
AMCG00019404 mRNA upstream 434165 18821163 ~ 18833805 (-) True AMCG00019404
AMCG00019403 mRNA upstream 601908 18988906 ~ 19004537 (-) True AMCG00019403
AMCG00019405 mRNA upstream 630357 19017355 ~ 19037399 (-) True AMCG00019405
TU41832 other downstream 2663500 15692482 ~ 15721452 (-) True G33381
TU41680 other downstream 3392956 14951842 ~ 14991996 (-) True G33259
TU41560 other downstream 3826662 14491891 ~ 14558290 (-) False G33163
TU41559 other downstream 3892734 14491891 ~ 14492218 (-) True G33163
TU41485 other downstream 4719722 13662116 ~ 13665230 (-) True G33106
TU42573 other upstream 1055397 19442395 ~ 19448573 (-) True AMCG00019419
TU42823 other upstream 2356532 20743530 ~ 20765496 (-) True AMCG00019446
TU43148 other upstream 4760863 23147861 ~ 23199608 (-) True G34470
TU43838 other upstream 11130998 29517996 ~ 29521984 (-) True G35067
TU43847 other upstream 11158233 29545231 ~ 29550162 (-) False AMCG00019556

Expression Profile