RNA id: AMCG00019398


Basic Information

Item Value
RNA id AMCG00019398
length 3519
RNA type mRNA
GC content 0.35
exon number 5
gene id AMCG00019398
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 18594983 ~ 18605836 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AATTGCTCAAGACAATGCATATTGCAAACAAGCATTCATTTGATGGATGTTTATGCATGTTAGTTTAGAAACAAAAGCTGATATTCACCTTGGGATATATAATGAACATTTCACAGAAGCTAAGATTGCAAATCCAGCACCTCACCAGTTCGTGTTGGACATCTCAAGGGTAGATCTTGGGTCACAATGTTGATCACAAGTTGTGTAACTGTTTTCAGGTCAGAGGAGCGCAGGTTTGATGAGAAATGACATTGTTAAACTCTGACACTGACAGGAACAGCTATATGACGACAGGTATGTGCGAGTGAGTTTCAACATCGCAGTGTTTGAGTGCTTTGCTGAAATCAGTGTTATCTGAGAttgcactgctgctgctgctgttgctaaAGATACATCTACAACTTTTTCTGCGTCCTGTAGCGGGCTGGATATTGAAACTTCATCCGGTTCCAACATAATGTCTGCAGAAGAGACTCACTTTGAGGGAAATCTCAACGACTTGCCCGAAGACtctaatataataaaactgcatttgtCCAAACTCAGACAGAGAGCAGAAAAAGAAGGCGATCGGCGCTACCCGATGGATTTATCCGACACTTTCTTAATAAAGTTTCTAAGAGCCAGAGATTTTGATGAGGATCTGTCCCTGCAGTTACTGATTAACTACCATAAGTGGAGGAATGAGTGTCCTGAAATAAGTGCAAATTTGCACCCATCTTCAGTCCTGGGTCTTCTGCATAATAATTATCACGGAGTGCTGAGGTCAAGAGATGCAAGTGGGAGCAGAGTTTTGATCTATAGAATTGGTCAATGGGAGCCAAAGGACTACACGGCCTATGAAGTTTTCCGTGTCAGCCTAATCACATCTGAGCTAATTGTACAAGAAATTGAGACTCAAAGAAATGGACTGAAAGCCATATTTGATCTTCAAGGCTGGCGCTTTGCTCATGCCCTCCAGATTAACCCATCATTGGCTAAGAAGATTTCAGCAGTTCTTACGGATTCCTTCCCATTGAAGGTGCGTGCGATACACCTTATAAATGAGCCAATTTTCTTTCACCCAGTCTTTGCTGTAATTAGACCATTTCTATCCGACAAAATAAAAGAACGGATCCACATGCATGGCAGCACATATGCACAAAGCCTTTGTCAGCAATTTCCAGAGAGCATTCTACCACCAGAATATGGAGGTACAGGCCCCACTGTGGAGGAGGTCTGCCAGGAGTGGACTGATTTTATTCTGCAATCAGAGGACCAGCTTCATAAACTCTCCATTGATGCCACAGATGTCCCAGATCAATGCCACTCAAGTGCCAACAGCTATTAATTCCAATCCTAACCATGTTTATAGCATAGTACTTtgtattgttgttcttttgtgCAGCCTTCAACCTTAATATTTCTAATCCAATACACTTCAAGGAACAGGGTCCACAGTTTGGcacaatgtaacaatatttaacTGACAAATATTCCATCAATACTGTTCACATAGCCTTTTATGTAGATATTTAAAAGAACATGATAATCAAATGATAATATTTGATACAAGCATAATATGAATTTATGTTTGGTTTCCAGATGTTAACATAATGGCAGTGTTACACAATATTACAGTCAAAGCAAAGTTTTTTACTGttctcatatatgtatatatagcagTGTGGATATTTTCAAAGAAGCCACTGCACTAAGTTTATTTCCAAGTTAAGACCATTTTGTATCCACCAAGCTCACTGGTGGTCACTTTCCAATTACAAAAGAGTGCAACAATGTgataaattaagatttaaagtTACAAAATGTAGGTCAAAGCAATACAAAGGTAGCAGAAACCATTTGCATTCTTAGACGTACAAAACTTACGGCCTATGAATGGCCAAAAAGCTATAGACTAATCAAAAGAGAACATGAGTACTTCAAAAAGAAAGTTGTACTTGTATGTTAAAGGGTAAATCTATTCTAATGTATAAAACTATAAGTGTACCACAATTTGTGAAGACATGCTTGACAGGTTCTTtgatatatccatccatccatccattttcaaaaccgctatcctggtgagggtcgcagggaagccggagccgatcgcTGGTTCTTTGATATATACTGTGGTCAAATAAGTCAAACAATGGATGTTTCTCATATCTACTATCAAGCATCATAACTGATTTACCATGGTTTTAACTAATCTATTACATGATTGGAAAATCTTGTGGCACTGAAAGAGATTTAATGAAGTAAAttagaaagataaaaaaataaactagtaCCTATTGGTCATAGGGTCATTGTACATAACTTCATATTTTATCTATATGTAAATATACTTAGAATTACTTGCATTGAAAAAAGGATAACTGATTCAGGGGATAAATGCTGCTCTTAATTGTATAACATATTAATTGTTTCTTCAGTTTACAATACACTTGCAAACATCACATTCATGACCGTGTAAATATCAATCTTTGCAAAGTTGCCACAGAATGCACAGGTTATAACAAAAATCACAAGACTgcttaatacttttttttatataaaccattaggcacagaggagagaaaaacaaaaactcctaaaTGATGACAGTCTGTTatagggaaaaataaattacaaagaaaattaGGAGTACAGTGACATGTGTTTTTGTAGTATGTAATTCAgtgttaatacattaattactttCTGGTACagtaattacatgtttttattataatttttaaagtattttcctTTTAAGTTTGTTATACCAGTTTCTATACTTAAATGTCTTACTCAAATGTTTTGTCTTGTATTTAGAtctacatgtatgtatgtataattcatATTCTACAGTATAAGATACACTTACAATATTTCATGTGTCTGTACAATAGTACTATTTTGCCTTCAGACTGAATTTCTTCAGAGATAAATGTTTACAGTGAGTGAACccattacattttctaaagaccacaaatatttaaaggtCAGTTCATATTTATGGcatatgaattaaatattacattcagGAAATCACATAAAACTCACAGATTTGAAATGCTCTGTTTGatcaatactttttaaattaaattacatctgTTAATCTAAGCATTATTCCAAAACATGTATACCTATCATTAACATACAAAACTGGATTTAATTCTAAAGCATGTATTTATCTCTGGTAAACTCTGTAAGGATTTTGTAGATAAATGGCAAGAAGGGATACTTGAGCATGTGGTGATTGATTCAATAGACTTTTCCCCataaaagataaagaaaaatgttagtCAGTATATCAACATATACCATTTAAGCCTGTCCAAATGTAAGAATGGCTGATAACTACCCTgctacataaaacatattttttacatttacaatgtttactttacttttagatttctaattaaagcatttttgctCACCACATTTAAAAGTTGActtaatacaaatttaactttTAAGCTGTGAAAAAATGTACTACAATGTAATAaattgcagaaaaaataaaatatttttgttttgtaa

Function

GO:

id name namespace
GO:0006810 transport biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0005215 transporter activity molecular_function

KEGG:

id description
K24455 TTPA; alpha-tocopherol transfer protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU42333 lncRNA downstream 207985 18384952 ~ 18386998 (-) False AMCG00019396
TU42278 lncRNA downstream 378241 18215608 ~ 18216742 (-) True G33765
TU42271 lncRNA downstream 396826 18179089 ~ 18198157 (-) True G33758
TU42194 lncRNA downstream 821658 17743162 ~ 17773325 (-) True G33686
TU42171 lncRNA downstream 970757 17623960 ~ 17624226 (-) True G33665
TU42360 lncRNA upstream 305 18606141 ~ 18615254 (-) True G33830
TU42512 lncRNA upstream 688976 19294812 ~ 19301547 (-) False AMCG00019417
TU42513 lncRNA upstream 688976 19294812 ~ 19301547 (-) True AMCG00019417
TU42514 lncRNA upstream 688976 19294812 ~ 19301547 (-) False AMCG00019417
TU42577 lncRNA upstream 861240 19467076 ~ 19480968 (-) True G34006
AMCG00019399 mRNA downstream 4064 18582850 ~ 18590919 (-) True AMCG00019399
AMCG00019396 mRNA downstream 153002 18384867 ~ 18441981 (-) True AMCG00019396
AMCG00019392 mRNA downstream 429849 18149487 ~ 18165134 (-) True AMCG00019392
AMCG00019390 mRNA downstream 683460 17897191 ~ 17911523 (-) True AMCG00019390
AMCG00019391 mRNA downstream 754572 17807455 ~ 17840411 (-) True AMCG00019391
AMCG00019404 mRNA upstream 215327 18821163 ~ 18833805 (-) True AMCG00019404
AMCG00019403 mRNA upstream 383070 18988906 ~ 19004537 (-) True AMCG00019403
AMCG00019405 mRNA upstream 411519 19017355 ~ 19037399 (-) True AMCG00019405
AMCG00019412 mRNA upstream 512561 19118397 ~ 19118897 (-) True AMCG00019412
AMCG00019409 mRNA upstream 612774 19218610 ~ 19229469 (-) True AMCG00019409
TU41832 other downstream 2873531 15692482 ~ 15721452 (-) True G33381
TU41680 other downstream 3602987 14951842 ~ 14991996 (-) True G33259
TU41560 other downstream 4036693 14491891 ~ 14558290 (-) False G33163
TU41559 other downstream 4102765 14491891 ~ 14492218 (-) True G33163
TU41485 other downstream 4929753 13662116 ~ 13665230 (-) True G33106
TU42573 other upstream 836559 19442395 ~ 19448573 (-) True AMCG00019419
TU42823 other upstream 2137694 20743530 ~ 20765496 (-) True AMCG00019446
TU43148 other upstream 4542025 23147861 ~ 23199608 (-) True G34470
TU43838 other upstream 10912160 29517996 ~ 29521984 (-) True G35067
TU43847 other upstream 10939395 29545231 ~ 29550162 (-) False AMCG00019556

Expression Profile