RNA id: AMCG00019399


Basic Information

Item Value
RNA id AMCG00019399
length 1648
RNA type mRNA
GC content 0.40
exon number 9
gene id AMCG00019399
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 18582850 ~ 18590919 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTCAGAGCATGTGAGCAGTTACGCAGTCGGCACTTCCGCAGAGACGTGTTTACAAACACGGCCATCGTGTCTTTACAGTTGGACGCTTGAGTGCGAAATtgcagttgttttctgtttagcagcaatatgcacattatgaatGTGGTAAGTTATGCGTTACCTTTACTTGCTGTCTTCCTGCGATTGACCGTTTCTGCtgatttcaaaacagaaaaaagaaacgaCAGACCTGTTATAGgTATTTTGGCTCAGGAAATATATTCACCTCATCCTTACGGAAATTCATATATCGCTGCATCCTATGTGAAGTTCTTGGAGGCAGCTGGAGCAAGAGTGGTACCCATAAAAATAAATCAACTGCAAGAGGAATATGAAAGACTGTTTTACTCGATCAATGGGTGGAGGTGCAAACCTCACCTCTTCGGGgcTAATTCTAAAGGTGACTATTTTCCTATCTGGGGAACCTGTTTAGGGTTGGAGGAGTTGACTTACCTTACCAGTGGAATGATTCTGTTATCTAAAACTAACACTTCAGGAGTTGCACTTCCATTGGTTTTCCAGAAAGGTGCCATGAAAAGCAGGCTGTTCGGGAGCCTTCCTGTAGATGTCTTGGATGCATTGGCCTCAGAGCCCATAACAGAAAACTCACACCGATGGAGTCTGTCTTTAGAGACTTACAATAAGAATGAGAAACTCAAAAACTTCTACAACATCTTGACCACAAACATTGATAAAAAACTGGAGTTTGTATCAACCATGGAAGCCTATGAATTCCCTATTTATGCCACTCAGTGGCACCCTGAGAAGAATCCCTATGAGTGGTCAAAGCCATATTATCCACATTCACCATCTGCTGTGAAGGCCACTTTTTACATGGCCGATTTCTTCGTTGGTGAAGCAAGGAAAAATTTCCACCAATTTCCAGACAAGGAAGCAGAACAGAAGGCTCTGATCTACAACTACAGTCCCATTTACACAGGAAATCACACAGACtttgaacaaatgtatttctttgatTAAAATGTGGCTTTTATAAAATCAGAAAACTTTTTATATTGGCAGGactttgcaaaatattcctCAAGTATTGATTAGTAAAATAGCACAATTCTTGCTGGTTTTACATAATTGTGTGCTTCTGTAAACTTTTAGTGATTTACAGTGCCCCTAGTGGTCACGGGCCACAGCCTGTAATACTGCTAAAGGTCATGACCTTTTCAAATGCAATACGTTTCCATGGCAACAGGGCATTCCAATACATTGGGCAGTATTCCAAATATGAGGACCAGAATACTCACCTTGACCTCGGGATACTGTCAGGATACTAGCCCTTGAAGACATTTTATTCGGAATATACTACCAAAGTGTGAAGTCATCTCCACAGCACGTGGTATCAAAACGTTATCCATTTCTCTTGGAATGGTCAACAGCCATCACAGGGCTTTGGTTTGTTTATGATCTAGTTATAAAAAGTGCTAAATTACATaattctttattaatattgGTTTTGTATAGAAAAGGctcagtagctcatctgttccAAATTTGAGAATGATTAATATTACTACTGACGAGTTTATCAGGGATGTAAATGCTGTTTATGTGGCTGATTCAAAACTATAATAAAATTTTGTAACGAGGACACTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU42333 lncRNA downstream 195852 18384952 ~ 18386998 (-) False AMCG00019396
TU42278 lncRNA downstream 366108 18215608 ~ 18216742 (-) True G33765
TU42271 lncRNA downstream 384693 18179089 ~ 18198157 (-) True G33758
TU42194 lncRNA downstream 809525 17743162 ~ 17773325 (-) True G33686
TU42171 lncRNA downstream 958624 17623960 ~ 17624226 (-) True G33665
TU42360 lncRNA upstream 15222 18606141 ~ 18615254 (-) True G33830
TU42512 lncRNA upstream 703893 19294812 ~ 19301547 (-) False AMCG00019417
TU42513 lncRNA upstream 703893 19294812 ~ 19301547 (-) True AMCG00019417
TU42514 lncRNA upstream 703893 19294812 ~ 19301547 (-) False AMCG00019417
TU42577 lncRNA upstream 876157 19467076 ~ 19480968 (-) True G34006
AMCG00019396 mRNA downstream 140869 18384867 ~ 18441981 (-) True AMCG00019396
AMCG00019392 mRNA downstream 417716 18149487 ~ 18165134 (-) True AMCG00019392
AMCG00019390 mRNA downstream 671327 17897191 ~ 17911523 (-) True AMCG00019390
AMCG00019391 mRNA downstream 742439 17807455 ~ 17840411 (-) True AMCG00019391
AMCG00019383 mRNA downstream 960959 17613116 ~ 17621891 (-) True AMCG00019383
AMCG00019398 mRNA upstream 4064 18594983 ~ 18605836 (-) True AMCG00019398
AMCG00019404 mRNA upstream 230244 18821163 ~ 18833805 (-) True AMCG00019404
AMCG00019403 mRNA upstream 397987 18988906 ~ 19004537 (-) True AMCG00019403
AMCG00019405 mRNA upstream 426436 19017355 ~ 19037399 (-) True AMCG00019405
AMCG00019412 mRNA upstream 527478 19118397 ~ 19118897 (-) True AMCG00019412
TU41832 other downstream 2861398 15692482 ~ 15721452 (-) True G33381
TU41680 other downstream 3590854 14951842 ~ 14991996 (-) True G33259
TU41560 other downstream 4024560 14491891 ~ 14558290 (-) False G33163
TU41559 other downstream 4090632 14491891 ~ 14492218 (-) True G33163
TU41485 other downstream 4917620 13662116 ~ 13665230 (-) True G33106
TU42573 other upstream 851476 19442395 ~ 19448573 (-) True AMCG00019419
TU42823 other upstream 2152611 20743530 ~ 20765496 (-) True AMCG00019446
TU43148 other upstream 4556942 23147861 ~ 23199608 (-) True G34470
TU43838 other upstream 10927077 29517996 ~ 29521984 (-) True G35067
TU43847 other upstream 10954312 29545231 ~ 29550162 (-) False AMCG00019556

Expression Profile