RNA id: AMCG00019401


Basic Information

Item Value
RNA id AMCG00019401
length 813
RNA type mRNA
GC content 0.58
exon number 1
gene id AMCG00019401
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 18810880 ~ 18811692 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAGAGGAGTATGAACATTAACGGAGCAGAAGGGGACCTGTTCCACAAAACTCTCAGTGCTGTCTCGGGCAAAAAAATGGACTCTTTCCGAGCTGCTGCTGGTATCGAGCTGCCTTCCCGGGATCGCCAGTCCCCGATCAACTGTTTCGATCACACCGACTCCGATCCCATTCAGCCTGGAGGACTAGGCGGCGGTCGCAGTGGCGGGCTGGGTCTTCCGACCGGATCTTTGTGTGCCAAGTACGGGGAAAGTGGCAACAGGACGTCGGCGGCGGAGAGCAGTGGTGGGGAGCAGAGCCCGGACGATGACAGCGACGACAGGTGTGAGATGGTGCTCATGGCAGACGGGAGGACAGTGGCGTCGGGGGGCAAACCTGAAGGCTCCGGaggtaagaaaaacaaagagcagAAACTACTGAGGCTGAACATCAACGCCcgggagaggaggaggatgcACGACCTGAACGACGCGCTGGACGAGCTGAGAGCGGTGATCCCCTACGCGCACAGCCCCTCTGTGCGGAAACTCTCCAAAATTGCCACTTTGCTACTCGCCAAAAATTACATCCTCATGCAGGCACAGGCACTGGAAGAGATGCGAAGGCTGGTTGCATACCTCAATCAAGGCCAGGCTATTTCTGCAGCCTCCCTGCCTGCAACCACAGCCCTCACCCCGGGCTTGGGTGCCTATGAGCAACCGCCCGGGTACCCTTTCCCTACCGGAGTCGCAGCCTCCTCCTGTCCCGACAAATGTGCCCTTTTCAACAACGTCACCTCCAGCCTCTGTAAACAGTGCACTGATAAGCCTTAA

Function

GO:

id name namespace
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
K09086 BHLHB4_5, BETA; class B basic helix-loop-helix protein 4/5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU42339 lncRNA upstream 227176 18576495 ~ 18583704 (+) True G33812
TU42335 lncRNA upstream 359477 18451133 ~ 18451403 (+) True G33810
TU42334 lncRNA upstream 360039 18450617 ~ 18450841 (+) True G33809
TU42319 lncRNA upstream 372615 18431364 ~ 18438265 (+) True G33800
TU42314 lncRNA upstream 411137 18399016 ~ 18399743 (+) True G33796
TU42411 lncRNA downstream 115355 18927047 ~ 18927287 (+) True G33874
TU42421 lncRNA downstream 193332 19005024 ~ 19016309 (+) False AMCG00019402
TU42419 lncRNA downstream 200550 19012242 ~ 19021412 (+) True AMCG00019402
TU42459 lncRNA downstream 395502 19207194 ~ 19209710 (+) True G33913
TU42509 lncRNA downstream 482183 19293875 ~ 19294208 (+) False AMCG00019415
AMCG00019397 mRNA upstream 149412 18607749 ~ 18661468 (+) True AMCG00019397
AMCG00019400 mRNA upstream 285782 18517139 ~ 18525098 (+) True AMCG00019400
AMCG00019395 mRNA upstream 432825 18337551 ~ 18378055 (+) True AMCG00019395
AMCG00019393 mRNA upstream 514659 18257809 ~ 18296221 (+) True AMCG00019393
AMCG00019394 mRNA upstream 571267 18231215 ~ 18239613 (+) True AMCG00019394
AMCG00019402 mRNA downstream 194914 19006606 ~ 19016294 (+) False AMCG00019402
AMCG00019408 mRNA downstream 270027 19081719 ~ 19089121 (+) True AMCG00019408
AMCG00019406 mRNA downstream 285044 19096736 ~ 19119509 (+) True AMCG00019406
AMCG00019411 mRNA downstream 377587 19189279 ~ 19190313 (+) True AMCG00019411
AMCG00019407 mRNA downstream 379885 19191577 ~ 19201678 (+) True AMCG00019407
TU41862 other upstream 2728937 16043942 ~ 16081943 (+) True G33406
TU41707 other upstream 3641039 15164348 ~ 15169841 (+) True G33283
TU41554 other upstream 4324174 14439253 ~ 14486706 (+) True G33159
TU40734 other upstream 8401383 10404639 ~ 10409497 (+) True G32539
TU40438 other upstream 9182218 9369898 ~ 9628662 (+) True G32293
TU42780 other downstream 1795782 20607474 ~ 20610889 (+) False G34170
TU42783 other downstream 1795782 20607474 ~ 20610889 (+) True G34170
TU42785 other downstream 1795782 20607474 ~ 20610889 (+) False G34170
TU43058 other downstream 3803931 22615623 ~ 22625205 (+) False AMCG00019475
TU43194 other downstream 4860433 23672125 ~ 23695801 (+) True G34511

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000018_06253286_06254071.mRNA True 2216 mRNA 0.46 1 CI01000018 6252701 ~ 6254916 (+)
eurasian perch (Perca fluviatilis) TU297704 True 2232 lncRNA 0.46 1 NC_053133.1 15766418 ~ 15768649 (+)