RNA id: AMCG00019404


Basic Information

Item Value
RNA id AMCG00019404
length 3533
RNA type mRNA
GC content 0.37
exon number 5
gene id AMCG00019404
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 18821163 ~ 18833805 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGGAGACCGGGGGAACCTCCAATTATTAAAGGGTGGATTCCTTATATTGGCAATGCTCTGGAGTTTGGAAAAAATGCCCAAATATTTCTTAATGCTCAAAAGAACAAATATGGTGACATCTTTACTGTCTATATTGCTGGTAAATACATTACTTTCATCATGGACCCTGTACTTTATCCATATGTCATTAAGCATGGGAAACAATTGGATTTCCATGAGTTCGCTGACCAAGTGTCTCCAATGACATTTGGTTATCCACCCATCCGAAACCAGAAGTTCCCTGGAATGGATGAGAGCATACATAGGTTCTATCAGTTACTGAAGGGGGACCATCTGACCTCCCTTACTGAGAACATGAGGAGGAATCTGGTATATCTGTTTCAGCAAGACTATCTGAGTAGAGAAGCAAGCTGGAGGACCGAGAACTTGTATTCGTTCTGCCATAAGATCATGTTCGAGGTCACTTTCTTGACAATGTATGGGAAGCCAGTCCACACTAACAGACATGTGGATATGGCTGCTGTGAGAGAGAACTTTGTGAAGTTTGATGCAATGTTTCCATTGTTAATCGCAAGAATTCCTATTGCATTCCTGGGAGCGACCAAGAAAATCCGAGAGGACTTGATCAGTTTCTTTTTGCCCCAGCGAATGTCAGAATGGATGGGACCATCAACATTTGTTCAGAGCAGAATAGAGCTCTTTGAACAGTATGAATCCCTTGGAGACATGGACAAAGCTgCACATCATTTTGCCATTCTGTGGGCCTCTGTTGGAAACACAGTTCCAGCCACATTCTGGACTGTGTACTACCTAGTGAGGCACCCAGAAGCCCTTTCTCTCGTGCGTGCGGAAATCCAGCGTGTTGTGCACTTGACAGGTGAAGAAGCAGGTCACGGCAATGGCATTACCCTCACCAGAGAACAATTAGACAGCCTGCGCTATTTAgGAAGTGCAATAAATGAAAGCCTGCGTCTGTCTTCAGCCTCTATCAACATCCGTGTGGCCCAGGAAGACTTCACTCTGATGTTTGAAAAGGACCAGTCCATCGCTGTGAGAAAAGGAGATCTCATAGCCCTCTATCCCCAGTGCATGCACATGGATCCAGAGATCTTTGAAGACCCAGAGACTTACAAGTTTGACCGATTTATTGAAGATGGGAAAGAAAAGACCAACTTCTACAAGCATGGCCAGAAACTGAAGTATTATTGGATGCCATTTGGTTCTGGAAATACTAAGTGTCCAGGCAGGTATTTTgcaatatatgaaataaagcaGTTTGTCACGCTATTGTTGCTGCAATTTGATATTGAAATTGTTCCTGGAGAGAGGCAAGTCAAACTAGACCACAGTCGTGCAGGACTTGGTATCCTGCCACCTGATTCTGATGTCTGTTTCCGATATAAAGCTAGGAATTTTTAAGGTGGTGCGTGTTATTCCTTCTACATACAACATGCACTTACTTTGAGCTTTGCAGATGATCTGGAGTCTAACAGTGCAGCAAATTACTCCACTGTCTGATGGGAATTGTAATCCTGAAGAAATGATCATCTGATTATCccacaaagaaaacattactgGAAAAGAAGGACTTAGCATTTTAAGTATTGGCTGTAACTACTGACAGACCTGGTTAAgctggagataaaaaaaaattacactcTCTAATGTCATATTATTTCAGATTAGCAAACAATAGTTATTTTACGGGGCTCTGAGATTCACTTTTACTCACTAGCACACTTTGTGAACATGTCTTTGCAACACTGCCACATAGTGAGATTACAGTGAGTGTCTGAGCTAAGAGCTGATTTGATTTAATGGATGTGATCTGAAGGAATCTAAAAAGGGACATGTAATCAAGACATGTACAGtcaaatatctgaaaataattattataataatatgattcTTGTTAAAAAGTACTAAAAAGATTTGTAACACTTAGCAACACTCTTTTGGAAGATGTATCAgattagttagttagttagttagttaggtGCATCCTGACCAGTACTCCATATTTTATGACCGATTCAAGATAGATTATTCCAAGGCCTTTGTGGTCCCTGTGTTGAATATGGCTGCTTAATTCTGTCCAAGGTCACCACATTCATCTATCAACATCATGATCAATGGTCAAATGACTGGGTTTGAGCACTGTTTAATGTTCAGATGTCCTCCATGGTATCCCTTTAGTTAGTTTTGGATATAGATCACTCATCTCCAGATAAGCTGTTTAGTaatgtgataaaataaaaaatgtgaactGATGAAAGAAGCAACTACTTTTCATTGTGACTATCCAGATGTGATGTGATGTCTATTAACATCAATAAGGGGGTTTATTCCATCACCCTGTTATATTTCTCactgtttgcttttttgttcaTAATATACATTGTAGCAgtaatgctttataaatatggaactttgcttttgctttttatttatagacAGTATGTATGGTCTTGTATTCTCATAGTCAGAGTCTCAAACCCCATCCCTTTCTGATTTAAAGCAACACACAAACCTAAACACAAACTGGATATTTAATGCTGTATCCTTACTCAAGTTTAAggtcttcattttttgtattttgaagaaAGTgtctaaaaataatgtatatacactaatgaaacaatgaacaaataataaaaaaaagtgtttattgattatacattttaaaattgcaatacattttttatttgatttaaagtaataaatgaATGTAACCAACTAAATATTTTCATGCACTCTTTAAAACATTAGTCAGGAACTAGTAactgaaatgctgaaatgtgggggatgaaaaaataaaatgtgtttcttcttaGTGTAGTACATTTTAGAGTGCAGGCAAAAAAGACAAATCTGAGTAACATCTTTTATCAGTAATCTACAGGTATTTGCCAGTAATTTCATTGTTGTATTTCATATAGAGGTTGAACTCATGCCCATGGATGTATCATTGAGAAAGATTTTAAACAGTACtcagtatacagtataattaTGTAGTCCACTCATAGGTATATTTCACAAGATTTCTAAAGTGACCTTCTTAATTAGCTTTAATATATTCCAccagtaaaaaatacatttaaaatacaatcagggaatacaaaatgtactgcTTATATAAACACTCTGTGAAAAagttttaaactgtgtttaacATATTTCTTTACTCTAAAAAGGAATAAAAGCAATCATCCCTGGGAAAATGTATTCCTATGATTCATATCTCTGTAGCTCAGGTCTCCAAACATTAATTGCTAACAATATTTACATACTAATATCATTCTGGGGAAATTATTATATCCTTCTTGGTTCATGATTCATCCTTGGTGATTCAAATAATTTAGGTACTATGGATTGAAAACGACAGAGTAATACAGCTATATGCAGGCGAAGTAATTTATAAAACTGGAACTAAATTAATGATTGAAAGTTGAAAACATGTCAAACCTTTGGAAGGGATTAAAGATCATTTATTGGAGTCTGATGTGTTCTTGGgagattaaaataagtttttt

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0016491 oxidoreductase activity molecular_function

KEGG:

id description
K07430 CYP7B; 25/26-hydroxycholesterol 7alpha-hydroxylase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU42360 lncRNA downstream 205909 18606141 ~ 18615254 (-) True G33830
TU42333 lncRNA downstream 434165 18384952 ~ 18386998 (-) False AMCG00019396
TU42278 lncRNA downstream 604421 18215608 ~ 18216742 (-) True G33765
TU42271 lncRNA downstream 623006 18179089 ~ 18198157 (-) True G33758
TU42194 lncRNA downstream 1047838 17743162 ~ 17773325 (-) True G33686
TU42512 lncRNA upstream 461007 19294812 ~ 19301547 (-) False AMCG00019417
TU42513 lncRNA upstream 461007 19294812 ~ 19301547 (-) True AMCG00019417
TU42514 lncRNA upstream 461007 19294812 ~ 19301547 (-) False AMCG00019417
TU42577 lncRNA upstream 633271 19467076 ~ 19480968 (-) True G34006
TU42753 lncRNA upstream 1644452 20478257 ~ 20549700 (-) True G34148
AMCG00019398 mRNA downstream 215327 18594983 ~ 18605836 (-) True AMCG00019398
AMCG00019399 mRNA downstream 230244 18582850 ~ 18590919 (-) True AMCG00019399
AMCG00019396 mRNA downstream 379182 18384867 ~ 18441981 (-) True AMCG00019396
AMCG00019392 mRNA downstream 656029 18149487 ~ 18165134 (-) True AMCG00019392
AMCG00019390 mRNA downstream 909640 17897191 ~ 17911523 (-) True AMCG00019390
AMCG00019403 mRNA upstream 155101 18988906 ~ 19004537 (-) True AMCG00019403
AMCG00019405 mRNA upstream 183550 19017355 ~ 19037399 (-) True AMCG00019405
AMCG00019412 mRNA upstream 284592 19118397 ~ 19118897 (-) True AMCG00019412
AMCG00019409 mRNA upstream 384805 19218610 ~ 19229469 (-) True AMCG00019409
AMCG00019410 mRNA upstream 402392 19236197 ~ 19253413 (-) True AMCG00019410
TU41832 other downstream 3099711 15692482 ~ 15721452 (-) True G33381
TU41680 other downstream 3829167 14951842 ~ 14991996 (-) True G33259
TU41560 other downstream 4262873 14491891 ~ 14558290 (-) False G33163
TU41559 other downstream 4328945 14491891 ~ 14492218 (-) True G33163
TU41485 other downstream 5155933 13662116 ~ 13665230 (-) True G33106
TU42573 other upstream 608590 19442395 ~ 19448573 (-) True AMCG00019419
TU42823 other upstream 1909725 20743530 ~ 20765496 (-) True AMCG00019446
TU43148 other upstream 4314056 23147861 ~ 23199608 (-) True G34470
TU43838 other upstream 10684191 29517996 ~ 29521984 (-) True G35067
TU43847 other upstream 10711426 29545231 ~ 29550162 (-) False AMCG00019556

Expression Profile