RNA id: AMCG00019405


Basic Information

Item Value
RNA id AMCG00019405
length 2827
RNA type mRNA
GC content 0.43
exon number 11
gene id AMCG00019405
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 19017355 ~ 19037399 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGGAGTGTGGCCTGGGAGCTGGGGACAGAACATTCTCATGCAGTCAGTCCCCAGAGCACGCAGTCAGGTGATAGTGCCACGGCTGAGACAGCTGCACAAGGTCCTGCATGTTCAGTATCTGTGCCTTGAGCTGGTGCACGTCTGCCTGCTGTGATTTATCAGGGCCACAACTATTCCAGCAGCTTCCAGCGCACACAGGAAAAGAGATTATGATCCTTGGCACTGGGAAGATCCAATGGGAATTGCATTGATTTGGTCCTTGATTGTAGTTCTAATCAGGTGGATTACCTCAAAGaGACGTGGGGCAATCTCCTATGACAGTTCAGACCAAACAGCTTTGTATATTCGTATGCTAGGGGCTTGTGTAATATTCAAACAGCTGTTTTCAAGAGATGTGAGAGTTAGGAGCCGAGTAGGCTTTGAACAGGAACGAAGAGGCTCTCATCCATATCTATACATTGATTTCCGAATTTTGCACTCCCGTCCCGAGTCCGCCGGGCCTGTTTCTGCCAGGAAGATCCGCAGGCTATTAAGTTTCCAGAGGTACCTGCACTCCTCGCGTTTCTTCCGTGGCATCCCTTGCCAGAACCCTCTGTATATACTGGATGATGACTACAATGGCCAAGCAAAGtgtatGCTGGAGAAAGTCGGAAGCTGGAATTTTGATATATTTCTGTTTGACAGATTAACAAATGGAAACAGTCTGGTCACCTTgacatttcatttgtttaaacaaTATGGATTGATTGAGCTCTTCCAATTAGACATGGTAAAACTTCGTAGATTTTTAGTGATGGTTCAAGAAGACTACCACAGCCAGAACCCATACCACAATGCTGTTCATGCTGCTGACGTGACTCAGGCCATGCACTGTTACTTAAAGGAGCCTAAGCTTTCCAAAGACCTCACCTCGTGGGATATTCTCCTGGGTCTGCTGGCAGCTGCGACACATGATTTGGACCACCCAGGGGAAATTGAGAAGAAACATAAACTTGATGTCAGCCCACTTTGtgacaaccaaacaaacaccaTTGCAAACATCCAGATAGGTTTCATGACCTACGTGGTGGAGCCTCTGTTTGTGGAGTGGGCTCGCTTCTCAGACACCCGGCTGTCTCAGACCATGCTGGGGTACCTGGGACTGAACAAAGCTGGCTGGAGGGGCATGCTGCAGGAGCAGGCCAGCAGCGGGGACGACACGGACCCGGCTTTGGAGGAAACGGACTCTGAAGTATTACCTCAGGGAAGCAAAACATTATGACACTCCACACAGAGCTGACTGAACACACTGGGGAGAGGAGCCGAGGAGTGGAGAATCGGACTGAACTGCGACTGCCACCACTTAACGGAGCACCTTTGCCAGAATGAAGTTGCATACCTCCCATCTCGAAAACCACTGATTTTTACCTTATTTAATTTGACCCATTTCCCTGGACATAGAGCAATACATAGATACCTCattttgctgttgctgtttttattttttaattttattcctcATTTTCTTTACGGCATTATTCATTGAATGCGACGCCCTTTTACTGGATAACTAAAGGGAACAGAATATGAAGCTTACATTGTTCTGCTGAAGTGCCATTCACAAacatttggttgtttttaaatggaaaccTTGAAAGTATTTAGAGTATTGGCTCTGTAGGACTGCACAACGAGCCGCACGAAGTGTGtcgatgcattttaaaacgtaTCTTCCTCCTTATGTATAAATGTGAAGAGCCCGCTCTTTTTGCTGCCTCTATTGAAGACTGTTTACaagtgtcttttttgttttgttgtgttttataaattaaaaatattggtTCTGAAATTTGCCTTTAAGCACAGGTGTGAAGAACCACTTTCATGGGAAGTTTTGTCTGATCAATGACATACAGAACAGCCTTCAGACTGCAGCTCTGACAAACACACCAGATGCCATACAAGCCTGCGATGCTCCATTGTGTTTCTCTCGCACTGTGAAACCATTTCTATTTGGACACAGCTCATGCGTCGGTCCAGAAGGTACTGGGAACATGGCCTTTTCCCTGGATTTCAAAACTGTCTGAGAACACTGGCCGGCGCTAAAACATCATCGCTCCTTCAGTGATGGCAAAGCATGAAGCCATCGCTGCTCCTAACACTTGAACAACCACTCTTTCATCCGAGAAAGCAGAACTGGATTAACACAAAATTAGCTCAGGGTATTTGCCAGTTTATCTGGAAGGAAGTGAGGGTGCCTATGAAACGAGCAGGCCCTGTCCCCTTTCAAGGCAAAACAACTTTCACTGAAACCCTCTGTCAGAATGTGACCATTTCAAAGAGCAACCAACCATATTCAAATGCAACCTGGAAGACTGCTACAGATGCCTTAAAACTATGCACAAAGCTAAGTGACCaaaccagttttattttcatgaagtgCATTGTTTTGTTCTCTTAACGCATTGTCCCAACTGTAGGCctttgatttcctttttattttttttattttagacaacTGAAGAATGATTTGATTCTCAGATATGAAACAttccctgtttttgtttgttttttgatattttaaattaatttgattctgTACAGATAGCacaattgtgtttttggttttgtgtttggaTGATGACAGgtgcttttcttattttaacaactttcttttttgttataaCTGTTTAAGACTGTTTGATAAACCTGTTTACAATTTGTTGTAACAGCCATTTTGGGGAGAAGACTTCAGCGTCAAGCCATTTTGTAAAGGCTTTGCCGTATCGACCTTTTTATATGTGCCTGTTGCagttacattttgattaataaaacaagttGACATAA

Function

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0046872 metal ion binding molecular_function
GO:0004114 3',5'-cyclic-nucleotide phosphodiesterase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU42360 lncRNA downstream 402101 18606141 ~ 18615254 (-) True G33830
TU42333 lncRNA downstream 630357 18384952 ~ 18386998 (-) False AMCG00019396
TU42278 lncRNA downstream 800613 18215608 ~ 18216742 (-) True G33765
TU42271 lncRNA downstream 819198 18179089 ~ 18198157 (-) True G33758
TU42194 lncRNA downstream 1244030 17743162 ~ 17773325 (-) True G33686
TU42512 lncRNA upstream 257413 19294812 ~ 19301547 (-) False AMCG00019417
TU42513 lncRNA upstream 257413 19294812 ~ 19301547 (-) True AMCG00019417
TU42514 lncRNA upstream 257413 19294812 ~ 19301547 (-) False AMCG00019417
TU42577 lncRNA upstream 429677 19467076 ~ 19480968 (-) True G34006
TU42753 lncRNA upstream 1440858 20478257 ~ 20549700 (-) True G34148
AMCG00019403 mRNA downstream 12818 18988906 ~ 19004537 (-) True AMCG00019403
AMCG00019404 mRNA downstream 183550 18821163 ~ 18833805 (-) True AMCG00019404
AMCG00019398 mRNA downstream 411519 18594983 ~ 18605836 (-) True AMCG00019398
AMCG00019399 mRNA downstream 426436 18582850 ~ 18590919 (-) True AMCG00019399
AMCG00019396 mRNA downstream 575374 18384867 ~ 18441981 (-) True AMCG00019396
AMCG00019412 mRNA upstream 80998 19118397 ~ 19118897 (-) True AMCG00019412
AMCG00019409 mRNA upstream 181211 19218610 ~ 19229469 (-) True AMCG00019409
AMCG00019410 mRNA upstream 198798 19236197 ~ 19253413 (-) True AMCG00019410
AMCG00019417 mRNA upstream 257413 19294812 ~ 19301235 (-) False AMCG00019417
AMCG00019416 mRNA upstream 269036 19306435 ~ 19307973 (-) True AMCG00019416
TU41832 other downstream 3295903 15692482 ~ 15721452 (-) True G33381
TU41680 other downstream 4025359 14951842 ~ 14991996 (-) True G33259
TU41560 other downstream 4459065 14491891 ~ 14558290 (-) False G33163
TU41559 other downstream 4525137 14491891 ~ 14492218 (-) True G33163
TU41485 other downstream 5352125 13662116 ~ 13665230 (-) True G33106
TU42573 other upstream 404996 19442395 ~ 19448573 (-) True AMCG00019419
TU42823 other upstream 1706131 20743530 ~ 20765496 (-) True AMCG00019446
TU43148 other upstream 4110462 23147861 ~ 23199608 (-) True G34470
TU43838 other upstream 10480597 29517996 ~ 29521984 (-) True G35067
TU43847 other upstream 10507832 29545231 ~ 29550162 (-) False AMCG00019556

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00046429 True 548 mRNA 0.51 6 NC_007135.7 24743530 ~ 24796583 (-)