RNA id: AMCG00019410


Basic Information

Item Value
RNA id AMCG00019410
length 3935
RNA type mRNA
GC content 0.53
exon number 4
gene id AMCG00019410
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 19236197 ~ 19253413 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cgataaaaaaaaagaaccgcTTCcgtgttgttttggttttgcaaTTGAGATAAATAACAGCTGCGTAAGGTGAAACGGAATTGATAAATCGCCGGTGAGTAGTCTATAATGGTTTTCTAAAGACAACACACTATAACAATTGTTTCGCAAAAATGTCTTTGCAGCAGGGGTTGAAGAAGAAGGACAAGCGCATTTTGTCAGGTACCTGCCCGGACCCGAAATGCCAGGCGAGGCTGTTCTTCCCAGCCTATGGCTCGGTTAGTATTGAATGTACTGAGTGCGGGCAGCGGCATGAACAGCGAAATCTCCTAAAAGTGGAAGAAGTCACTGATCCGGACGTGGTGCTTCATAATTTACTAAGAAATGCCCTTCTCGGCGTTACCGGCGCCCCCAAAAAGGGATCCGAGTTAGTCAAAGTGATGGGGCTCTCCAACTACCACTGTAAGCTGCTATCTCCAATCCTAACCAGGTACGGAATGGATAAACAGACAGGGAAAGCCAAGTTATTAAGAGAGATGAACCAGGGAGAAATGTTTGATTGTTCACTGCTGGGGGACAGGGCTTTTCTCATCGAGCAGGAGCATGTGACCACTGTTGGCTATGGCAAAGATCGCTCTGGCAGCCTTATTTATCTGCATGACACTTTGGAGGAGGTGAAGAAAGTCAACTGGAATAAAGAGTGCCTCATTCCTGTGCATGTCGATGGGGATGGACACTGCTTGGTCCATGCTGTGTCTAGGGCACTGGTGGGCAGAGAACTATTCTGGCATGCCCTGCGCGAAAACTTAAAGCAAAACTTCAAGCAAAACCTGGATCGATACAAGGCTCTCTTTCAAGACTTCATCGATGCAGCAGAATGGGAGGACATTATCAATGAGTGTGATCCCTTATTTATTCCACCTGAGGGGGTGCCCCTAGGACTGCgtaatattcatatatttggGTTGGCTAATGTCTTGCACCGCCCCATCATTTTGCTTGACTCGCTGAGTGGGATGAGGAGCTCAGGGGACTATTCTGCCACTTTCCTCCCAGGGCTGGTACCAGAGGAGAAGTGCAAAGGGAAGGATGGGCAGTTCAACAAGCCCATATGCATCGCCTGGAGCAGCTCAGGTCGCAACCACTACATTCCACTTGTTGGAATAAAAAGTGCCCCTCTGCCGAAATTGCCTGCAAGGCTGCTCCCAAAGGCCTGGGGCGTACCACAAGAACtcattaagaaatacattaaactggAGACCGATGGGAGCTGTGTAATTGGCGGAGACAGAAGCTTGCAGGACAAGTACCTGATGAGACTAGTTTGTGCCATGGAAGAGGTCTTTATGGATAAGCATGGCATCCACCCCTCGCTGGTGGCGGACGTGCATCAATATGTGTACAGAAGGACAGGTGTAATAGGAGTTCAGCCTGAAGAAGTTACAGAGGCTGCGAAAAAAGCTGTAATGGAAAACCGCCTTCACCGCTGCTTGATCTGCAATGCACTTTCAGAACTCCACGTGCCTCCAGAGTGGCTAGCCCCTGGGGGCAAGCTCTACAATCTGGCCAAAACCACTCATGGGCAGCTGCGGCCTGACAAGAATTACAGCTTCCCCCTGAACAACGTTGTATGCTCTTATGACCCTGATAGGGATGTTTTGCTTCCTGACTACAAGCTGAGCCAATTAAATGCATGCAACTGGTGTCATGGCACTTCTGTGCGCCACGTCCGCGGGGATGGCTCTGTGGTATACTTGGATGGGGACAGAACCAACACCCGCTCTCAAGGGGGCAAGTGTGGCTGTGGGTTCAGGCATTTCTGGGAAGGGAAGGAGTATGACAATCTGCCCGAGGCCTTCCCCATCACTCTGGAATGGGGAGGCAGGGTGGTGAGGGAGACGGTGTACTGGTTCCAGTATGAGACTGATGCCAGCCTGAACAGCAATGTTTATGATGTTGCCATGAAATTGGTCACCAAACATTTCCCAGGCGAGTTTGGGAGTGAGATCCTGGTGCAAAAAGTTGTGAACACCATTTTAAATCACACTGCCAAGAAGAATCCTGACGAGTACAACCCTGTGGCTATCGATGGGGCGCACGCACAGAGGCTGGGTGAGGTCCTGGAAGGGCAGGCAGCTGGGGAGGTGCAGCCTCCAACCAAAATAATCTTGACTGGCCAGAAAGCAAAGACCCTACATAAAGAGGAGCTTAACATGAGCAAAGCAGAGCGACATCTGCAGCAGAGCATCAGCGAGCACGCCTcagtcacacaaaaaaagaggaCGGACAAGCTGAAGCAGGAGCAGAAAGGTCAGATGAGACCTGCTTCTCCAGGCCCCGTCCGAGAAGCAACCTCTTCAACCCCTGCCACCCCCACCAAAGCTCCTTACTCGCCTAAGTCTAATAAGGAGAAAAAGATCCGTGTGACCACCAATGATGGACGGCAGGCCATGCTGACACTCCAGGCAGAGACTACTTTCTCAGAACTCCAGAAGAGCATTGCCAAAGAATTTGCTGTGCCTCCAGCCCAGCAGTGTATTCGCTATGACTTCCCTCCGAAGGAACTTTCCCCCCCTAAGGAGGGGCAGGAGAATGAGCCAGTGCCCCTGCAGCATGGGGACAGGGTGACTCTGGAGGTGGTGAGGGATCCCAAGGAGAAAGAAGTGGCAGCCCCTGCtgcctccacctccacctccacatCTGCCCTCCATGCAGTCAAGAGCGAGGAGCCTGCCTCTTCCAGCAGAGTGAACTCCAGAGAGCTGCAGGATAACATTGATCTTGAGATGTCCTCCCTCTGCCTTCTAGCAACCTTAATGGGAGAGGATGTCTGGTCTTACGCAAAGAAGTTGCCTCACTTATTTCAGCAAGGTGGAGTTTTCTACAACATCATGAAGAAAGACATGgGTTTGATGGATGGCAAACACTGCACTCTGCCCCACATGCCAGGGAAGACCTTCGTGTACAACGCGTCCGAGGATCGCCTGGAGCTGTGTGTAGACACTGCAGGACATTTCCCTGTGGGCCCTGACGTGGAGGACCTGGTGAAAGAGGCTCTGACACAGCTGCGCTCTGAGGTGGCCTCCAGGAGCAGAGAGGGCAGCCCTTCCCATGGCTTGCTGAAGCTCGGTAGCGGAGGAGTGGTCAGGAAGAAGTCCGAGCAGTCGCACAATGTAACTGCCTTCCAGGGCAGAGGCCACTCTCTGGGGAGCGCAACCGGCAGCCCACCCCCGGATCAGAGGCCCAAGGAGAAGCCCATCTCACGGAAGCACAGCAGCGGGGTGGACCTGAGCGGCAGCGTCTCCAAGCAGGAGGCGGATCTCTCCGACATCTCCGAGGACACGGCCAAGGAGCTGGTTCGCATGGCCCCCGGGTTTGTGACCATGAAGGATGGAAGGCACCTGGACCCCAGCATGATTGAGGCCCAGCGCAAAAAGCTGCAGGAGATGGTGTCCTCCATTCAGGCCTCCATGGACAGGCATTTACGAGAACAAAGCCTAGGGGATTCTGGGAGTGGGGGAGACGCCACTCCAAGGAAGGCAGATGCTGGAACCTCAACAAGTAGGACAGAAAGTACCAGAATGACTGCGTCCGAGTCTGGCTCGGGGACCGGGGGCCACAAGACTTCAGGGATGGAAGTGACTGCTGGCATAAGCAGCATGGTGGAAATGACTGCAATATATTCGTCAACGCTGCAACTGGCTTACACTGGGGCCTGCACTTTAAATGAACTGCAATTCCCACAATCCTTCGCGGATCCATTCCAGCCCCGCCCATATCACGCTCCCCCGCCTCCGGCCAATCAGCGCCCACACCGCATGCGCAGATTCAAACCCTCTTCCAGAAGGAGGCTGGGCGCGAGAATCGGCGGGATGCACAAAAAAAATCCGAAGTACGAAAATAAGATCAGTGTGCAGTCCAGGAAGGCAGGGCGAGCCGTCATCGAGGCGGGTTAA

Function

GO: NA

KEGG:

id description
K11861 VCPIP1, VCIP135; deubiquitinating protein VCIP135

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU42360 lncRNA downstream 620943 18606141 ~ 18615254 (-) True G33830
TU42333 lncRNA downstream 849199 18384952 ~ 18386998 (-) False AMCG00019396
TU42278 lncRNA downstream 1019455 18215608 ~ 18216742 (-) True G33765
TU42271 lncRNA downstream 1038040 18179089 ~ 18198157 (-) True G33758
TU42194 lncRNA downstream 1462872 17743162 ~ 17773325 (-) True G33686
TU42512 lncRNA upstream 41399 19294812 ~ 19301547 (-) False AMCG00019417
TU42513 lncRNA upstream 41399 19294812 ~ 19301547 (-) True AMCG00019417
TU42514 lncRNA upstream 41399 19294812 ~ 19301547 (-) False AMCG00019417
TU42577 lncRNA upstream 213663 19467076 ~ 19480968 (-) True G34006
TU42753 lncRNA upstream 1224844 20478257 ~ 20549700 (-) True G34148
AMCG00019409 mRNA downstream 6728 19218610 ~ 19229469 (-) True AMCG00019409
AMCG00019412 mRNA downstream 117300 19118397 ~ 19118897 (-) True AMCG00019412
AMCG00019405 mRNA downstream 198798 19017355 ~ 19037399 (-) True AMCG00019405
AMCG00019403 mRNA downstream 231660 18988906 ~ 19004537 (-) True AMCG00019403
AMCG00019404 mRNA downstream 402392 18821163 ~ 18833805 (-) True AMCG00019404
AMCG00019417 mRNA upstream 41399 19294812 ~ 19301235 (-) False AMCG00019417
AMCG00019416 mRNA upstream 53022 19306435 ~ 19307973 (-) True AMCG00019416
AMCG00019418 mRNA upstream 64290 19317703 ~ 19323473 (-) True AMCG00019418
AMCG00019421 mRNA upstream 78588 19332001 ~ 19339682 (-) True AMCG00019421
AMCG00019420 mRNA upstream 114559 19367972 ~ 19400055 (-) True AMCG00019420
TU41832 other downstream 3514745 15692482 ~ 15721452 (-) True G33381
TU41680 other downstream 4244201 14951842 ~ 14991996 (-) True G33259
TU41560 other downstream 4677907 14491891 ~ 14558290 (-) False G33163
TU41559 other downstream 4743979 14491891 ~ 14492218 (-) True G33163
TU41485 other downstream 5570967 13662116 ~ 13665230 (-) True G33106
TU42573 other upstream 188982 19442395 ~ 19448573 (-) True AMCG00019419
TU42823 other upstream 1490117 20743530 ~ 20765496 (-) True AMCG00019446
TU43148 other upstream 3894448 23147861 ~ 23199608 (-) True G34470
TU43838 other upstream 10264583 29517996 ~ 29521984 (-) True G35067
TU43847 other upstream 10291818 29545231 ~ 29550162 (-) False AMCG00019556

Expression Profile