RNA id: AMCG00019412


Basic Information

Item Value
RNA id AMCG00019412
length 501
RNA type mRNA
GC content 0.56
exon number 1
gene id AMCG00019412
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 19118397 ~ 19118897 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAAGCTCAATTTCCTCATTTCTACCGTGGTTCTTCTCGTTGCCTTTCTACCACGCCATGAATGTAGAGCTCTCGACAGCCCGGGCGCTGTCCAACACGCTCCCGACTCCCAGTCCGacctgcagcagcagcccctGCCCGTCCTGGTGCGCCTGGGAGAGGAGTACTTCATCCGGCTGGGCAATGTCAACAAGAACCCCCCACCGTCCACAGCCAACCTCTCTCCTGAAGACTCCTCGACCACCGTCAACAGGGCTCTGCAACTGCAGCTCACACAGCGGCTTTTGCAAGGCAAAGTTGGTAACATCAGTCGGTTTGTGAGCAGCTCCGGTAACCAGATTGAAGACCTGATGGAAAGGGGGAAGCGGTCCGAAGAGCCCCCCATTTCCCTGGACCTGACCTTCCACCTGCTCAGAGAAGTGCTAGAAATGGCTCGGGCGGAGCAGTTAGCCCAGCAAGCACACAGCAACAGGAAAATGATGGAGATCATCGGAAAGTAA

Function

GO:

id name namespace
GO:0032400 melanosome localization biological_process
GO:0035902 response to immobilization stress biological_process
GO:0005576 extracellular region cellular_component
GO:0005179 hormone activity molecular_function

KEGG:

id description
K05256 CRH; corticotropin-releasing hormone

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU42360 lncRNA downstream 503143 18606141 ~ 18615254 (-) True G33830
TU42333 lncRNA downstream 731399 18384952 ~ 18386998 (-) False AMCG00019396
TU42278 lncRNA downstream 901655 18215608 ~ 18216742 (-) True G33765
TU42271 lncRNA downstream 920240 18179089 ~ 18198157 (-) True G33758
TU42194 lncRNA downstream 1345072 17743162 ~ 17773325 (-) True G33686
TU42512 lncRNA upstream 175915 19294812 ~ 19301547 (-) False AMCG00019417
TU42513 lncRNA upstream 175915 19294812 ~ 19301547 (-) True AMCG00019417
TU42514 lncRNA upstream 175915 19294812 ~ 19301547 (-) False AMCG00019417
TU42577 lncRNA upstream 348179 19467076 ~ 19480968 (-) True G34006
TU42753 lncRNA upstream 1359360 20478257 ~ 20549700 (-) True G34148
AMCG00019405 mRNA downstream 80998 19017355 ~ 19037399 (-) True AMCG00019405
AMCG00019403 mRNA downstream 113860 18988906 ~ 19004537 (-) True AMCG00019403
AMCG00019404 mRNA downstream 284592 18821163 ~ 18833805 (-) True AMCG00019404
AMCG00019398 mRNA downstream 512561 18594983 ~ 18605836 (-) True AMCG00019398
AMCG00019399 mRNA downstream 527478 18582850 ~ 18590919 (-) True AMCG00019399
AMCG00019409 mRNA upstream 99713 19218610 ~ 19229469 (-) True AMCG00019409
AMCG00019410 mRNA upstream 117300 19236197 ~ 19253413 (-) True AMCG00019410
AMCG00019417 mRNA upstream 175915 19294812 ~ 19301235 (-) False AMCG00019417
AMCG00019416 mRNA upstream 187538 19306435 ~ 19307973 (-) True AMCG00019416
AMCG00019418 mRNA upstream 198806 19317703 ~ 19323473 (-) True AMCG00019418
TU41832 other downstream 3396945 15692482 ~ 15721452 (-) True G33381
TU41680 other downstream 4126401 14951842 ~ 14991996 (-) True G33259
TU41560 other downstream 4560107 14491891 ~ 14558290 (-) False G33163
TU41559 other downstream 4626179 14491891 ~ 14492218 (-) True G33163
TU41485 other downstream 5453167 13662116 ~ 13665230 (-) True G33106
TU42573 other upstream 323498 19442395 ~ 19448573 (-) True AMCG00019419
TU42823 other upstream 1624633 20743530 ~ 20765496 (-) True AMCG00019446
TU43148 other upstream 4028964 23147861 ~ 23199608 (-) True G34470
TU43838 other upstream 10399099 29517996 ~ 29521984 (-) True G35067
TU43847 other upstream 10426334 29545231 ~ 29550162 (-) False AMCG00019556

Expression Profile