RNA id: TU42513


Basic Information

Item Value
RNA id TU42513
length 1288
lncRNA type sense_over
GC content 0.48
exon number 7
gene id AMCG00019417
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 19294812 ~ 19301547 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCTGAGCAGAGCGCATAAAGACGGCAGTCACGCATGCGCCGCACACTGGAGACGAGCAGCCTGCCAGCATGGCGGCGGCGGCGCCACTCATTTCACAATTGTTGCTACTTTCACCAGGTCTATTGATGTGCTCTGTCGAGAGAAATTGGTCTTCGTGTGAAAGACTGAAACTGTTAGTGACTCCATCATGACAACTTTCCAAATATAGGAAGCGGTGGATGGTGACATTGTGGGGGCTGGAGGACTACTCCAGTGGACCATGggaAGACCACAGAACACTGGCCACTGGGAAGTTTCTCGGACCTGATCATGGTAAGTGTGAGATGGAaggattttgtgtttgtgacgGGCAGGGTGTTGGAAAGCTGAATAATCCAATGTGTACAGGGCTTGTGGGTTATTCACTGCAGCATCCCACTGGAATAAAGGCAGTTTGTGGGTTGGGCGAGTTCCGTGTAGAGGTGATTAATGGGGAAAGAATGATTTAATGCTGTCCTTTGAACAAAGGGGGCTGATTTCCCTCTGTGGAGAAATGTGCTCTGTGTATCCCTATGATCGTAGGTAAAAGTTCTGCCCCTCTTAGATGAGTTGATGTGTAACATTTCTTATGAGTTTAGTATGAACTCGGAACAGTAGTTAAAGGTGAAGAAATGCTGCCTTTGACCTATTACAACGTACCCCTAGAGTCTCCTGGTCAGTGTTGCTGCTGGATCTGTGATGATTTGCTTCTTTGCCGTTTACCCATCAGACTCTAGCTGGGTTGCTGACAATGCACTTATCTGAGTCTCCAGCACCAATACGGACCTAGGTAGACTGGTGTATCAATGGATCTGGGGTCTTGTACAGAATACTGTCTATATGCTCCCTGCTGTGGCTTCTGCATATgcttttgaagtgttttttcaACAGGTACCAGTGCATCGCTTCATCCAGAACATGGCTAATTTTAAACTGGTTGTTTCAGTCCGCAGTGGATCGTGATGGTGAGGAGCACGGAGGACAGCTGACAGCTAGGCAGTGGTGGAGAATGACATCGCAGAGTATGGCGGACTGCTCTCGGAGAGGACAACCAAGAATCCATGGAAGAGGGATGTGAAAATCCTGTGTTTCAGGACTATCTTGTGACCGGACTCACaGGTGAAGACTGAAGACTTCAGTTGTTGGAGGAGCAGTTTCAACCACCCTCGATTGGCTGGATGGCAGTTTCCAGTGTGCAATTAGTCTTTTGCCCATCTTTGAATTCATGTAGAGGTTCTGACCAATAAAGGGATTCGCATTCAATCCAGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU42360 lncRNA downstream 679558 18606141 ~ 18615254 (-) True G33830
TU42333 lncRNA downstream 907814 18384952 ~ 18386998 (-) False AMCG00019396
TU42278 lncRNA downstream 1078070 18215608 ~ 18216742 (-) True G33765
TU42271 lncRNA downstream 1096655 18179089 ~ 18198157 (-) True G33758
TU42194 lncRNA downstream 1521487 17743162 ~ 17773325 (-) True G33686
TU42577 lncRNA upstream 165529 19467076 ~ 19480968 (-) True G34006
TU42753 lncRNA upstream 1176710 20478257 ~ 20549700 (-) True G34148
TU42915 lncRNA upstream 2136368 21437915 ~ 21438156 (-) True G34277
TU42921 lncRNA upstream 2244661 21546208 ~ 21546524 (-) True G34283
TU43098 lncRNA upstream 3406398 22707945 ~ 22719120 (-) False AMCG00019487
AMCG00019410 mRNA downstream 41399 19236197 ~ 19253413 (-) True AMCG00019410
AMCG00019409 mRNA downstream 65343 19218610 ~ 19229469 (-) True AMCG00019409
AMCG00019412 mRNA downstream 175915 19118397 ~ 19118897 (-) True AMCG00019412
AMCG00019405 mRNA downstream 257413 19017355 ~ 19037399 (-) True AMCG00019405
AMCG00019403 mRNA downstream 290275 18988906 ~ 19004537 (-) True AMCG00019403
AMCG00019416 mRNA upstream 4888 19306435 ~ 19307973 (-) True AMCG00019416
AMCG00019418 mRNA upstream 16156 19317703 ~ 19323473 (-) True AMCG00019418
AMCG00019421 mRNA upstream 30454 19332001 ~ 19339682 (-) True AMCG00019421
AMCG00019420 mRNA upstream 66425 19367972 ~ 19400055 (-) True AMCG00019420
AMCG00019419 mRNA upstream 142922 19444469 ~ 19454969 (-) False AMCG00019419
TU41832 other downstream 3573360 15692482 ~ 15721452 (-) True G33381
TU41680 other downstream 4302816 14951842 ~ 14991996 (-) True G33259
TU41560 other downstream 4736522 14491891 ~ 14558290 (-) False G33163
TU41559 other downstream 4802594 14491891 ~ 14492218 (-) True G33163
TU41485 other downstream 5629582 13662116 ~ 13665230 (-) True G33106
TU42573 other upstream 140848 19442395 ~ 19448573 (-) True AMCG00019419
TU42823 other upstream 1441983 20743530 ~ 20765496 (-) True AMCG00019446
TU43148 other upstream 3846314 23147861 ~ 23199608 (-) True G34470
TU43838 other upstream 10216449 29517996 ~ 29521984 (-) True G35067
TU43847 other upstream 10243684 29545231 ~ 29550162 (-) False AMCG00019556

Expression Profile