RNA id: AMCG00019418


Basic Information

Item Value
RNA id AMCG00019418
length 690
RNA type mRNA
GC content 0.48
exon number 5
gene id AMCG00019418
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 19317703 ~ 19323473 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGATGGTTCGTCTTAATGTGGATCTGATTGCTAAGAGCAGTGttcacaaacagaacaaaagaaaTGAGTCCCTCGGACAGTACCTCAAGAAACTGACTCACTTAAATTTTTCCAACAAGAACATCGAAGATATTGATGACCTGTCTATGTGCAAAAACCTGACAGTCCTGTACTTGTATGACAATCAAATAACCCAGATCTGCAACCTGGGTTTCGCTTGCAACCTCACCCACCTGTATATGCAGAACAACAATATTACACACATAGAGAACCTGTCGTTCCTGCTGCGGCTTTCCAAACTGTACCTGGGCGGTAACTGCATCACCGTGGTGGAGGggctggaggagctgaaggaCCTGAGGGAGCTGCATGTCGACAGCCAGAGGCTGCCCCCTGGAGAGAAGCTGCTGTTTGATCCCAGGACCCTCCACGCCATCGCTGAGTTAGAGATGGTGTCCAACCAGTGGCCTCAGCTATGGCGAATGGATTTGACTGGAAACCCTGTGTGTCATAAACACAAGTATAGGGACAGACTGATAACTGTGTGCAAGACCCTCGAGGTTCTTGATGGGAAAGAGATAAATGAACTGTCCAGGCAGTTTCTCATAAACTGGAAAGCCTCCAAAGAGGCAAAGAAGAGAAGCAAAGGTGAAGGAATAATTGCCGATCCGGCTCCCTACTCCATCTCT

Function

GO: NA

KEGG:

id description
K17579 PPP1R42, LRRC67; protein phosphatase 1 regulatory subunit 42

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU42512 lncRNA downstream 16156 19294812 ~ 19301547 (-) False AMCG00019417
TU42513 lncRNA downstream 16156 19294812 ~ 19301547 (-) True AMCG00019417
TU42514 lncRNA downstream 16156 19294812 ~ 19301547 (-) False AMCG00019417
TU42360 lncRNA downstream 702449 18606141 ~ 18615254 (-) True G33830
TU42333 lncRNA downstream 930705 18384952 ~ 18386998 (-) False AMCG00019396
TU42577 lncRNA upstream 143603 19467076 ~ 19480968 (-) True G34006
TU42753 lncRNA upstream 1154784 20478257 ~ 20549700 (-) True G34148
TU42915 lncRNA upstream 2114442 21437915 ~ 21438156 (-) True G34277
TU42921 lncRNA upstream 2222735 21546208 ~ 21546524 (-) True G34283
TU43098 lncRNA upstream 3384472 22707945 ~ 22719120 (-) False AMCG00019487
AMCG00019416 mRNA downstream 9730 19306435 ~ 19307973 (-) True AMCG00019416
AMCG00019417 mRNA downstream 16468 19294812 ~ 19301235 (-) False AMCG00019417
AMCG00019410 mRNA downstream 64290 19236197 ~ 19253413 (-) True AMCG00019410
AMCG00019409 mRNA downstream 88234 19218610 ~ 19229469 (-) True AMCG00019409
AMCG00019412 mRNA downstream 198806 19118397 ~ 19118897 (-) True AMCG00019412
AMCG00019421 mRNA upstream 8528 19332001 ~ 19339682 (-) True AMCG00019421
AMCG00019420 mRNA upstream 44499 19367972 ~ 19400055 (-) True AMCG00019420
AMCG00019419 mRNA upstream 120996 19444469 ~ 19454969 (-) False AMCG00019419
AMCG00019429 mRNA upstream 558256 19881729 ~ 19895839 (-) True AMCG00019429
AMCG00019430 mRNA upstream 590546 19914019 ~ 19918646 (-) True AMCG00019430
TU41832 other downstream 3596251 15692482 ~ 15721452 (-) True G33381
TU41680 other downstream 4325707 14951842 ~ 14991996 (-) True G33259
TU41560 other downstream 4759413 14491891 ~ 14558290 (-) False G33163
TU41559 other downstream 4825485 14491891 ~ 14492218 (-) True G33163
TU41485 other downstream 5652473 13662116 ~ 13665230 (-) True G33106
TU42573 other upstream 118922 19442395 ~ 19448573 (-) True AMCG00019419
TU42823 other upstream 1420057 20743530 ~ 20765496 (-) True AMCG00019446
TU43148 other upstream 3824388 23147861 ~ 23199608 (-) True G34470
TU43838 other upstream 10194523 29517996 ~ 29521984 (-) True G35067
TU43847 other upstream 10221758 29545231 ~ 29550162 (-) False AMCG00019556

Expression Profile