RNA id: AMCG00019421


Basic Information

Item Value
RNA id AMCG00019421
length 1581
RNA type mRNA
GC content 0.42
exon number 4
gene id AMCG00019421
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 19332001 ~ 19339682 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCGGTGATGGAACATGCTGGTGTCATGGCGGCTCTGTTAGTCTGTGTTTTTGGGTCTTGctaaatgtctgtgttttgcatAGACTGTTGTGTATATTTATCGAAACTGAAGACGCTTGCTGGATTGTTGTTGCTGCCCTGCATGGCAAAAAGAACCATAACTTTCCTCTGAAGATCGCAAAAACGGATCGTTTTGGGAAAATGGCCGGGACCAGTATGGCCCAGAAGACATGGGAGCTTTCCAACAGCATGCAGGAAGTGCAGAGCATTGATGAAATTTATAAATACGACAAGAAACAGCAGCAGGAGATCCTGGCCGCAAAGCCCTGGACTAAAGATCATCACTACTTCAAATACTGCAAGATCTCCGCCCTGGCTCTTCTGAAGATGGTGATGCACGCAAGGTCCGGGGGTAACCTGGAGGTGATGGGGCTGATGCTGGGAAAGGTGGATGGAGAGACTATGAACATCATGGACAGTTTTGCCCTGCCGGTGGAGGGAACTGAGACCCGTGTCAATGCCCAGGCAGCTGCATACGAGTACATGGCTGCTTACATAGAGAACGCAAAACAGAATTCAGACTACACCACTGGCCAAGTGTTCGACTTGTCTGAAAAGTTGGAGCAGTCGGAGGCCCAGCTGGGCAGAGGAAGCTTCATGCTGGGCTTAGATACTCATGACAGGAAGTCTGAAGATAAATTAGCCAAGGCAACAAGAGACAGCTGCAAGACTACCATAGAAGCTATCCATGGCTTGATGTCCCAAGTTATTAAGGACAAGCTCTTCAATCAAATCAACACCTCCACCAACTAACCATGAAGACCGCAAAGCAGGAGATGACAGATCActcaatagttattttattctttttcatgTCCTATTTTTTGTTTACTGGACTCTTCACGTTGGAAGAGGATGAACCAAACGTATTCTTCCATTAATTCTGCTCAATAATACTCAGTATCCGAAGCAGCCATGTGTGAGCTATTGCCTTGATGTAGTTTGCACTTACTCAGTACATTTTCAAGTTTCCCCTCttgatttttttcctgtgtgacTTAGCAGTACTGTATTTCATGACATGTATTCGCCTCTacctgcacaaaataaataaatgttttaccagagctcttgtttgcatttttagattgcagtattaaaataaggtggtgaTCTTGGTATTCTGTGTCAGTATGTGTAGAGAAGAAACATCTTGCggaggctttcatccagcagtggatcaatgtATGGTGGTGGGGATGAGATATAGATTCTTAGATACACATGCAATATATACAGCAGTCTGATTCAAACTGAAGAGGTGTGCTGTGCCACAGAAACAGCGTTTTTTATTCATGTCCTGATTTCTAATTCATTGGAATCTTGAAGATATTTTCTCCAAATAAGACGAGACTTCAAAGGAAAGCTTTTGATCGTTTGTCTGTTAATGACAGTAATATAAAGTTTAACAAATTACCTATTTTTACTCTTAACTTGTGCAGAATCAGCCTATTTATATTAATGGAAACTGCAAATATCCATGGTCACATTTTACATTCTTAAATTTTTATTGTAATCTTTT

Function

GO: NA

KEGG:

id description
K09613 COPS5, CSN5; COP9 signalosome complex subunit 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU42512 lncRNA downstream 30454 19294812 ~ 19301547 (-) False AMCG00019417
TU42513 lncRNA downstream 30454 19294812 ~ 19301547 (-) True AMCG00019417
TU42514 lncRNA downstream 30454 19294812 ~ 19301547 (-) False AMCG00019417
TU42360 lncRNA downstream 716747 18606141 ~ 18615254 (-) True G33830
TU42333 lncRNA downstream 945003 18384952 ~ 18386998 (-) False AMCG00019396
TU42577 lncRNA upstream 127394 19467076 ~ 19480968 (-) True G34006
TU42753 lncRNA upstream 1138575 20478257 ~ 20549700 (-) True G34148
TU42915 lncRNA upstream 2098233 21437915 ~ 21438156 (-) True G34277
TU42921 lncRNA upstream 2206526 21546208 ~ 21546524 (-) True G34283
TU43098 lncRNA upstream 3368263 22707945 ~ 22719120 (-) False AMCG00019487
AMCG00019418 mRNA downstream 8528 19317703 ~ 19323473 (-) True AMCG00019418
AMCG00019416 mRNA downstream 24028 19306435 ~ 19307973 (-) True AMCG00019416
AMCG00019417 mRNA downstream 30766 19294812 ~ 19301235 (-) False AMCG00019417
AMCG00019410 mRNA downstream 78588 19236197 ~ 19253413 (-) True AMCG00019410
AMCG00019409 mRNA downstream 102532 19218610 ~ 19229469 (-) True AMCG00019409
AMCG00019420 mRNA upstream 28290 19367972 ~ 19400055 (-) True AMCG00019420
AMCG00019419 mRNA upstream 104787 19444469 ~ 19454969 (-) False AMCG00019419
AMCG00019429 mRNA upstream 542047 19881729 ~ 19895839 (-) True AMCG00019429
AMCG00019430 mRNA upstream 574337 19914019 ~ 19918646 (-) True AMCG00019430
AMCG00019431 mRNA upstream 622340 19962022 ~ 19969808 (-) True AMCG00019431
TU41832 other downstream 3610549 15692482 ~ 15721452 (-) True G33381
TU41680 other downstream 4340005 14951842 ~ 14991996 (-) True G33259
TU41560 other downstream 4773711 14491891 ~ 14558290 (-) False G33163
TU41559 other downstream 4839783 14491891 ~ 14492218 (-) True G33163
TU41485 other downstream 5666771 13662116 ~ 13665230 (-) True G33106
TU42573 other upstream 102713 19442395 ~ 19448573 (-) True AMCG00019419
TU42823 other upstream 1403848 20743530 ~ 20765496 (-) True AMCG00019446
TU43148 other upstream 3808179 23147861 ~ 23199608 (-) True G34470
TU43838 other upstream 10178314 29517996 ~ 29521984 (-) True G35067
TU43847 other upstream 10205549 29545231 ~ 29550162 (-) False AMCG00019556

Expression Profile