RNA id: AMCG00019423



Basic Information


Item Value
RNA id AMCG00019423
length 360
RNA type mRNA
GC content 0.59
exon number 3
gene id AMCG00019423
representative True

Chromosome Information


Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 19614916 ~ 19625804 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGATGAGGCCTCTCAATGCACTGGACGAGCTGTATCGATTAATGGAGTCTTTCATCAGCTCGAAACGCACGGCGTCCTGCCAGTTCACGGCCTGTGGAGCGTCTGGCGTGGGCCTGCTGTCAGTGGCCTCTGAGCTGTGCAACCGCCTGGGGGCCTGTCACATCATGATGTGCAACAGTGGTGTCCACAGGTGCACCCTGAGCGTTACTCTTGAACAGGCCATCCTGCTGGCAAGGAGCCATGGACTGCCCCCCCGCTGCATCATGCAGGCCACTGATGTCATGAGGAAACAGGGAGCAAGAGTTCAAAACTCAGCCAAGAACCTGGGCGTGAGGGACCGCACCCCCCAGTCTGTTCCC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU42574 lncRNA upstream 159779 19451576 ~ 19455137 (+) True AMCG00019428
TU42509 lncRNA upstream 320708 19293875 ~ 19294208 (+) False AMCG00019415
TU42459 lncRNA upstream 405206 19207194 ~ 19209710 (+) True G33913
TU42419 lncRNA upstream 593504 19012242 ~ 19021412 (+) True AMCG00019402
TU42421 lncRNA upstream 598607 19005024 ~ 19016309 (+) False AMCG00019402
TU42670 lncRNA downstream 445532 20071336 ~ 20071564 (+) True G34084
TU42673 lncRNA downstream 449374 20075178 ~ 20078454 (+) True G34086
TU42682 lncRNA downstream 469514 20095318 ~ 20096450 (+) True G34093
TU42789 lncRNA downstream 981670 20607474 ~ 20610889 (+) False G34170
TU42802 lncRNA downstream 1007273 20633077 ~ 20635272 (+) True G34183
AMCG00019427 mRNA upstream 13276 19536834 ~ 19601640 (+) True AMCG00019427
AMCG00019428 mRNA upstream 159944 19451247 ~ 19454972 (+) False AMCG00019428
AMCG00019414 mRNA upstream 248388 19340246 ~ 19366528 (+) True AMCG00019414
AMCG00019415 mRNA upstream 320830 19285536 ~ 19294086 (+) True AMCG00019415
AMCG00019413 mRNA upstream 331184 19269809 ~ 19283732 (+) True AMCG00019413
AMCG00019424 mRNA downstream 36570 19662374 ~ 19665136 (+) True AMCG00019424
AMCG00019422 mRNA downstream 54964 19680768 ~ 19688614 (+) True AMCG00019422
AMCG00019426 mRNA downstream 100781 19726585 ~ 19736870 (+) True AMCG00019426
AMCG00019425 mRNA downstream 221353 19847157 ~ 19877863 (+) True AMCG00019425
AMCG00019433 mRNA downstream 489520 20115324 ~ 20122534 (+) True AMCG00019433
TU41862 other upstream 3532973 16043942 ~ 16081943 (+) True G33406
TU41707 other upstream 4445075 15164348 ~ 15169841 (+) True G33283
TU41554 other upstream 5128210 14439253 ~ 14486706 (+) True G33159
TU40734 other upstream 9205419 10404639 ~ 10409497 (+) True G32539
TU40438 other upstream 9986254 9369898 ~ 9628662 (+) True G32293
TU42780 other downstream 981670 20607474 ~ 20610889 (+) False G34170
TU42783 other downstream 981670 20607474 ~ 20610889 (+) True G34170
TU42785 other downstream 981670 20607474 ~ 20610889 (+) False G34170
TU43058 other downstream 2989819 22615623 ~ 22625205 (+) False AMCG00019475
TU43194 other downstream 4046321 23672125 ~ 23695801 (+) True G34511

Expression Profile