RNA id: AMCG00019426



Basic Information


Item Value
RNA id AMCG00019426
length 732
RNA type mRNA
GC content 0.53
exon number 3
gene id AMCG00019426
representative True

Chromosome Information


Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 19726585 ~ 19736870 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CGTCAACCAGTCTGGGACTCAGATCTAATGTCTGCCAGAGGCGGGGGCTCCCTCAGCCAGAAACAAACGAAGGAGTCCTTCTTCTCAAAGGAACTGCAGTGTATGGAGAAACATCTCGCTGaagtggaaaaggacctgGCCAAGATGGCTGAAGGTAAATTATTGAGGAGTCCCAACAGTCCACACAGCAGTCTTCTCCTGTCACCAGCGCTTCAAGGCAGTCTTCAGCCTTTGTCAGGTCCAACTTCTAGACCTCAATCACCAGGAAGCCTTGCTGGTAAAAGCAGCCCACTGCCTCTATATGGAAGCAAACCAGCCTCCCTTGTAACAAGTAGATCACAGACACCAAGCAACCAAAACAGTAGGCCTCAAACTCCCAACGCACAGAGCAGCAGGCCCAGAACGCCTTCAGCTCAAGGAAATAGGCCTGTGACCCCTAACAGTTTGATGCCACGACCTGTCACTCCTGGCACACACAGCAACAAGGATGACAGCTTTGGAAGTCAGAGGAGCAGACCGGTCACACCTACAAGTCAGGCTGGACGGCCTCTACTTACTCCAACTGGGCTGACTACGGGGCCAATCGCTGCTGAGAGTATGGGAAAACCTTCGAGTCAAAGGACCAACCTGTCAGAGGACGAGTTCTATCAGCAGCTCCAGGCTGTCCGACAGCCTTGGCTTATTCCCAGTGACACAGACAGCGACTGTGTGGATCAGGCTGATCAAGACAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU42574 lncRNA upstream 271448 19451576 ~ 19455137 (+) True AMCG00019428
TU42509 lncRNA upstream 432377 19293875 ~ 19294208 (+) False AMCG00019415
TU42459 lncRNA upstream 516875 19207194 ~ 19209710 (+) True G33913
TU42419 lncRNA upstream 705173 19012242 ~ 19021412 (+) True AMCG00019402
TU42421 lncRNA upstream 710276 19005024 ~ 19016309 (+) False AMCG00019402
TU42670 lncRNA downstream 334466 20071336 ~ 20071564 (+) True G34084
TU42673 lncRNA downstream 338308 20075178 ~ 20078454 (+) True G34086
TU42682 lncRNA downstream 358448 20095318 ~ 20096450 (+) True G34093
TU42789 lncRNA downstream 870604 20607474 ~ 20610889 (+) False G34170
TU42802 lncRNA downstream 896207 20633077 ~ 20635272 (+) True G34183
AMCG00019422 mRNA upstream 37971 19680768 ~ 19688614 (+) True AMCG00019422
AMCG00019424 mRNA upstream 61449 19662374 ~ 19665136 (+) True AMCG00019424
AMCG00019423 mRNA upstream 100781 19614916 ~ 19625804 (+) True AMCG00019423
AMCG00019427 mRNA upstream 124945 19536834 ~ 19601640 (+) True AMCG00019427
AMCG00019428 mRNA upstream 271613 19451247 ~ 19454972 (+) False AMCG00019428
AMCG00019425 mRNA downstream 110287 19847157 ~ 19877863 (+) True AMCG00019425
AMCG00019433 mRNA downstream 378454 20115324 ~ 20122534 (+) True AMCG00019433
AMCG00019445 mRNA downstream 726453 20463323 ~ 20463886 (+) True AMCG00019445
AMCG00019444 mRNA downstream 806717 20543587 ~ 20545758 (+) True AMCG00019444
AMCG00019440 mRNA downstream 818837 20555707 ~ 20565280 (+) True AMCG00019440
TU41862 other upstream 3644642 16043942 ~ 16081943 (+) True G33406
TU41707 other upstream 4556744 15164348 ~ 15169841 (+) True G33283
TU41554 other upstream 5239879 14439253 ~ 14486706 (+) True G33159
TU40734 other upstream 9317088 10404639 ~ 10409497 (+) True G32539
TU40438 other upstream 10097923 9369898 ~ 9628662 (+) True G32293
TU42780 other downstream 870604 20607474 ~ 20610889 (+) False G34170
TU42783 other downstream 870604 20607474 ~ 20610889 (+) True G34170
TU42785 other downstream 870604 20607474 ~ 20610889 (+) False G34170
TU43058 other downstream 2878753 22615623 ~ 22625205 (+) False AMCG00019475
TU43194 other downstream 3935255 23672125 ~ 23695801 (+) True G34511

Expression Profile