RNA id: AMCG00019430


Basic Information

Item Value
RNA id AMCG00019430
length 576
RNA type mRNA
GC content 0.53
exon number 2
gene id AMCG00019430
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 19914019 ~ 19918646 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atgtgctaCCTGACTTTCATCCAGTCCCTAATGGTGTCTGGCTACCTGAGCAGCGTCATCACCACCATAGAGAAGAGGTACAGCTTGAGGAGCTCCGAGTCTGGATTGCTGGTGAGCTGCTTTGACATTGGAAGTCTCTTGGTGGTGGTCTTCATCAGTTATTTCGGGGGTCGAGGGCAGAGACCCCGATGGCTGGCTGTGGGTGGGGTTTTTATAGCTGTGGGAGCAGCTCTATTCTCCTTACCTCACTTCATCTCCCCTCCTTACCAAATTCAAGAGGTAAACTCCTCCACCAGCAATGGAGGCCTATGCATGACTGGCAATGGAACCGGAAAGGACCTTCTGGAGACATCAGCCTGCCCCAGGGAGCAAGCCGGGAATGACCACTCGCTCTATGTGGCTCTCTTTGTCTGCGCCCAGATCCTCGTAGGAATGGGCTCCACCCCCATCTATACCCTTGGACCAACCTACCTGGATGACAACgtcaagaaagaaaatgcttcaCTATATTTAGGGGACCTCGGTCTCATTCTGATACACTCTGCCTCTGTCCGGTTTGGGGCGGCCAGCTCCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU42577 lncRNA downstream 433051 19467076 ~ 19480968 (-) True G34006
TU42512 lncRNA downstream 612472 19294812 ~ 19301547 (-) False AMCG00019417
TU42513 lncRNA downstream 612472 19294812 ~ 19301547 (-) True AMCG00019417
TU42514 lncRNA downstream 612472 19294812 ~ 19301547 (-) False AMCG00019417
TU42360 lncRNA downstream 1298765 18606141 ~ 18615254 (-) True G33830
TU42753 lncRNA upstream 559611 20478257 ~ 20549700 (-) True G34148
TU42915 lncRNA upstream 1519269 21437915 ~ 21438156 (-) True G34277
TU42921 lncRNA upstream 1627562 21546208 ~ 21546524 (-) True G34283
TU43098 lncRNA upstream 2789299 22707945 ~ 22719120 (-) False AMCG00019487
TU43099 lncRNA upstream 2789299 22707945 ~ 22744182 (-) True AMCG00019487
AMCG00019429 mRNA downstream 18180 19881729 ~ 19895839 (-) True AMCG00019429
AMCG00019419 mRNA downstream 459050 19444469 ~ 19454969 (-) False AMCG00019419
AMCG00019420 mRNA downstream 513964 19367972 ~ 19400055 (-) True AMCG00019420
AMCG00019421 mRNA downstream 574337 19332001 ~ 19339682 (-) True AMCG00019421
AMCG00019418 mRNA downstream 590546 19317703 ~ 19323473 (-) True AMCG00019418
AMCG00019431 mRNA upstream 43376 19962022 ~ 19969808 (-) True AMCG00019431
AMCG00019432 mRNA upstream 54654 19973300 ~ 20015967 (-) True AMCG00019432
AMCG00019437 mRNA upstream 153133 20071779 ~ 20096454 (-) True AMCG00019437
AMCG00019438 mRNA upstream 178740 20097386 ~ 20193004 (-) True AMCG00019438
AMCG00019435 mRNA upstream 274605 20193251 ~ 20197134 (-) True AMCG00019435
TU42573 other downstream 465446 19442395 ~ 19448573 (-) True AMCG00019419
TU41832 other downstream 4192567 15692482 ~ 15721452 (-) True G33381
TU41680 other downstream 4922023 14951842 ~ 14991996 (-) True G33259
TU41560 other downstream 5355729 14491891 ~ 14558290 (-) False G33163
TU41559 other downstream 5421801 14491891 ~ 14492218 (-) True G33163
TU42823 other upstream 824884 20743530 ~ 20765496 (-) True AMCG00019446
TU43148 other upstream 3229215 23147861 ~ 23199608 (-) True G34470
TU43838 other upstream 9599350 29517996 ~ 29521984 (-) True G35067
TU43847 other upstream 9626585 29545231 ~ 29550162 (-) False AMCG00019556
TU43875 other upstream 9719920 29638566 ~ 29645963 (-) False AMCG00019554

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000018_03513125_03558562.mRNA True 5455 mRNA 0.47 19 CI01000018 3511362 ~ 3558720 (+)