RNA id: AMCG00019431


Basic Information

Item Value
RNA id AMCG00019431
length 3480
RNA type mRNA
GC content 0.42
exon number 8
gene id AMCG00019431
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 19962022 ~ 19969808 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aacattaaaaaaaaaaaagtaatgatctcttattaaacattttaaatacaaatgaattcGTTGCAAATATAACTCAACTATGCATTTGTTGAATCAAACCAGACGTCTGATAATGCtcttatatataaaacattgatttgaGTTTTGGGCGTAGTTTATTCATGCCAGACAGTTTTTCTTTAGAAGAAGtacattgtaattgtttatgtatatctttattttgaactaattttaatagttacatttatattaaagagAAGATGCATGTTTAAGTTTCTGACAGTCCAACAATTAATCTGTTAAAGACAATAAAAGTGTCTCCACGATATGCAGAAAGTAATTTCCTACACACAATCCAGGATTAGCTGCGAGGTGATGTGAAGTTGTGCAGCTCCGGAGTGTTGTCTGTTGAGTGATGTCCTGTAAATATAAAAGCGTGGGATCAGTGGAAAGCAggttagtaataataatgtgttaaagtGCCATCCCCAGGGGCGCAGATAGATAATCTGGATGAGCTGATTTCTGACCAATGGCTGTCAGGAGGGGGACAGGCATCTCCTCCGGTCCTGTCTCTGTCCAGTCCACTCTTCACACCAGCTGCCCTCAGTCGTGCATGGGGCAGGATGAGCACTGCAACTCGCTGTCTGTCCTCAACCTGGGAACCCGAGTAGATGCGCTGGGTTAAACAAAGCTATTGAAGAAGCGTGTGTGAAAGTATTCATTCCTATGATGTCTTTGGAGTTAACAGACCTGAACATTTAAAACGAGAAAAGCATCCGATCTAGAACAATAAGaTCAAAggctggaacagaattcctttCCCAGACTCTGAAATCTTTGATCTCCTACTGGGATGTCGTTGTCATTGTCAAGCAATCCTGCATTGAAGGACAAGAGTTACCATTTAGAAACTCTCACAACCAGTCCGGATAAACTACCACATTATTACCCGGCTGTGCTGCCCGGCTCGCAATATATGGATGTCTTCAGAAGCGCCCAGAGCATCTTCCACCCGCTCAAGTCTCTGGGACGCCTTGTCACGGACACGCAAACAGTGATGCCATTTAACTTCAGTGGACTCCCATCCTTTCTCAACCCTCACCACCAGTCAACCGCCCTGCATGGACAACTCTTCAACGTGTTACCGTCACACAAGCACCCAGCCAGCATCCCCAACCCTCTCTACTCCAGACATGAAGATGCAGGTGCCAGGGTTACTGGTCAACCTGCGCGACCTAGATCAGGGTTCAATAGTCCTCAAAGCGAGACAACTCTTTCAACGTGTTCTCCGGCAAAAGAAAGTGTCTTCAGTGCGCACAGTGGCGGCCCGATGGCGGAGAGAGCCCGCACTTTCAACTTCACCGAGGAGGACCTGTACACGGTGCTATACGGATATTCAAAGGAGAACAGAGACCAGAGCATTGGCCACGCTATATCTGGACTGGTATTCCCTGAACATGCAGTTCCTGAATCTCAATTCCAACTACTGGATTGCGATTCCCTTGACCTGCCAGAAGGATTGTCTATTCTGCAAACAAAATACGGATGTTTTCCTCACTACGGCATTTACTGCAAAAGCATCATTCCGAAGGGGTGCAGGTTTGGACCCTTTCAGGGAAAGGTGGTCAACACCAGTGAAATCAAAACCTACGATGACAACACGCTTATGTGGGAAATTTTCGACAATGGCCGGCTGAGCCATTTCGTGGACGGCAGGGGCTCGTCGGGTAATTGGATGTCTCTGGTGAAGTGTGCCCGGTTTCCAGAGGAGCAAAACCTCACCGCTGTCCAGAGCCAGGGCCAGATCTTTTACGAGGCCTGTAAAGAAATTCGGCCCAAACAAGAGCTGTTGGTGTGGTATGGAGATTGTTACTCGCAGTTTCTGGGAATCCCGCTGACCCTGAAAGAGCTTGCAGACGAAAAGGACCTCCAACAGCAGAATGAGGAATCTGGGGACGGATTCAAGTGTGACCGATGTGGGAAAGTGTTTGCGTACAAATACTACAGAGACAAACATCTGAAGTACACGCGTTGTGTGGACCAGGGGGACAGGAAATTCCCGTGTCACCTCTGCAACAGATCATTTGAGAAGCGGGATCGACTCCGCATCCACATTTTACACGTACACGAGAAGCACAGACCCCACAAAGCTTTCACCGCTTCCAGCATCCTGCGGACTCACATTAGGCAGCACTCGGGCGAGAAACCCTTCAAATGCAAGCACTGTGGAAAGGCTTTCGCATCCCACGCAGCTCATGACAGCCATGTGAGACGAACCCACGCCAAGGATAAACCACATACCTGCGATGTGTGTGGGAATACATTTCAAGAGCTGGAAGAACTGAAATATCACATGAAGAACCACGAAGATAGACCACTGTTAGAAACTACCATTGCAGCAGACGTCAAAAACTCCTGCATTCCTACAAATGTGCCCACAGAAGGGGATTTGTACACCAAAACCAAGGACTGTTCCAGTGGGAAAAGGATTCATGGAGAGAGCTACTCATTCATGACAAACACTAGCATCACAGTCCTCAATCCAGAGGGTTATAGGCCCTggaattaaaaagagaaaaaataaattaagattaaaGATGCTGctatcagtttttgttttacagatgaaattgctttctgcttttaattattgtaaaaaaaatgtataatttttaattttacaattgttctttgacattttaaatttttgtGTGATGGCAAGGTCTATGATGAATTTAAGtttcaaaagtatttaattttatttgttttatattcttcCAGAAATAGTCTATATTGTCTGAGTCATTTACATACGTTGACTTCAAGCTACAATTCTGTTCTTTGCACATGCACAAACACTTTTTAATGGCTActtttataatatgcaaatttGTTTGCACAAGGACGTTTTAACTGAGATTATATTGCACATTAACAAATAACCCGATAGAATGtggttatttctttaaaaatgttttacttctgTTCTGCATAAAATACTGGCATTCAGAAAAGGCATTTGAACTTTTGAACTTACCTTGCCAATCTTCAATGTGCTTCATGATAGattttatagaataaaatgATAGATGGCCTCAGGACACTATGCAATTATTTACTACCTCTAAGATATATCCCCTGTACTGACTGTTAGATCATTGTGTCCTTCTGTGTTACTGTAAATGCAAAGCTGTTTGTTAGAAGCTACCAGTTATgtgaaatactgtttatattgaAAGATGTGCacattcaatttataaataaagaatcaTTGGGCATGGAAATAAAATTAGTATTGCTTCCATTATTCAGAGGGATTCGATTTGCATAGGAatgtttaagttattttatttatgtctggAAAGTTTAAGCCTTTTATCTTGTAAATGTGAACAGTTTGTAATTTGTCTGCAGCCATGGAGCTTTATGTAACTATACAATTCCAACTaataaatgcatcattaaaTGTTGCTACAA

Function

GO:

id name namespace
GO:0007409 axonogenesis biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K24646 PRDM14; PR domain zinc finger protein 14

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU42577 lncRNA downstream 481054 19467076 ~ 19480968 (-) True G34006
TU42512 lncRNA downstream 660475 19294812 ~ 19301547 (-) False AMCG00019417
TU42513 lncRNA downstream 660475 19294812 ~ 19301547 (-) True AMCG00019417
TU42514 lncRNA downstream 660475 19294812 ~ 19301547 (-) False AMCG00019417
TU42360 lncRNA downstream 1346768 18606141 ~ 18615254 (-) True G33830
TU42753 lncRNA upstream 508449 20478257 ~ 20549700 (-) True G34148
TU42915 lncRNA upstream 1468107 21437915 ~ 21438156 (-) True G34277
TU42921 lncRNA upstream 1576400 21546208 ~ 21546524 (-) True G34283
TU43098 lncRNA upstream 2738137 22707945 ~ 22719120 (-) False AMCG00019487
TU43099 lncRNA upstream 2738137 22707945 ~ 22744182 (-) True AMCG00019487
AMCG00019430 mRNA downstream 43376 19914019 ~ 19918646 (-) True AMCG00019430
AMCG00019429 mRNA downstream 66183 19881729 ~ 19895839 (-) True AMCG00019429
AMCG00019419 mRNA downstream 507053 19444469 ~ 19454969 (-) False AMCG00019419
AMCG00019420 mRNA downstream 561967 19367972 ~ 19400055 (-) True AMCG00019420
AMCG00019421 mRNA downstream 622340 19332001 ~ 19339682 (-) True AMCG00019421
AMCG00019432 mRNA upstream 3492 19973300 ~ 20015967 (-) True AMCG00019432
AMCG00019437 mRNA upstream 101971 20071779 ~ 20096454 (-) True AMCG00019437
AMCG00019438 mRNA upstream 127578 20097386 ~ 20193004 (-) True AMCG00019438
AMCG00019435 mRNA upstream 223443 20193251 ~ 20197134 (-) True AMCG00019435
AMCG00019436 mRNA upstream 238009 20207817 ~ 20278351 (-) True AMCG00019436
TU42573 other downstream 513449 19442395 ~ 19448573 (-) True AMCG00019419
TU41832 other downstream 4240570 15692482 ~ 15721452 (-) True G33381
TU41680 other downstream 4970026 14951842 ~ 14991996 (-) True G33259
TU41560 other downstream 5403732 14491891 ~ 14558290 (-) False G33163
TU41559 other downstream 5469804 14491891 ~ 14492218 (-) True G33163
TU42823 other upstream 773722 20743530 ~ 20765496 (-) True AMCG00019446
TU43148 other upstream 3178053 23147861 ~ 23199608 (-) True G34470
TU43838 other upstream 9548188 29517996 ~ 29521984 (-) True G35067
TU43847 other upstream 9575423 29545231 ~ 29550162 (-) False AMCG00019556
TU43875 other upstream 9668758 29638566 ~ 29645963 (-) False AMCG00019554

Expression Profile