RNA id: AMCG00019443


Basic Information

Item Value
RNA id AMCG00019443
length 1037
RNA type mRNA
GC content 0.49
exon number 4
gene id AMCG00019443
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 20594770 ~ 20599493 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGCAAACACACCCACGGCTATGGAAACGAGCCGGTAACACAGGAGCGCCGCAGCCTCCGCCAGCAGAGGCCGGTCCGTGTCACTAAGCACCGGCAATGGCTGAAGTGGGCGGCTGCTGAACCGCACTGTGGACCACCGTGATATCGGTGATGGCGCTGCCCAAATTAGTGATGTTCGCCGCAGCCAGCGATGTGCGGGACAGCAGCCCGGCCACCGTGCAGCTGCTGGGGCGCTTCGGTGGGCTGGGACCCGTCCGAGGGAAGGGCGCCGGCGGGGTGAGGAGGAGAAACCTCGGGGCTCAGCATGTACAGCTGGGCCaatcaaAGGGTGTAAAGGGTTCACAAGCCACCTGCATCATTGAAGGGTCCACCTTTTCATCATTTATACCGAAAGATGACCGGACATTGACTGGATGTGGCTTTGACCACAAATGTCCTGACAAAGAGATGTCTGAAAAACTTTTTCTGTTTGAGAAGCAGCGGAGGGATGGCACATTAGATTCTAAGTATGAtttcaaagCGTATGCCTACGCTGATCCTGTGCACGGAGCCCCTGCTTCTTTCATTCAAAGACTGTCGGAAATCTCGTCTCTAGAAAGTGAGACTGTGCGGCAAGAGAGAATTAAGAAGCTGAAGAAGAACAAGAGACAGGAATCCTACAAACAGTGCCTCAGTAAGGAAAGCCAACAGCAATCCTGTAGTGCCAGAACATttcaactttcaacttttttccccacaaaatAAACTGGTGCTGTGTCTAAGTGTTGAAAAAGCATCTTAGAAATGCTTTTGAAACAAAAGTTGAATTGACATCTTCACAGATGCATTCATGTTAAATTTTTTGTATACAGTAAATTGAAGCCaactctgttttgttttttttactgaccaggaatcacaaataaaaaaggcttgAGTTCAGTCTTTTTTTGGATCTGCAGAGTCACTTGTTTCAGCTTGTTTCCCCTGCTGGTGTATAAGATCACAGTTGGATGGGGGACCTATATATTGTGTAGCATCCTAGAAGTTTGTTTCCGG

Function

GO: NA

KEGG:

id description
ko03018 RNA degradation

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU42753 lncRNA downstream 45070 20478257 ~ 20549700 (-) True G34148
TU42577 lncRNA downstream 1113802 19467076 ~ 19480968 (-) True G34006
TU42512 lncRNA downstream 1293223 19294812 ~ 19301547 (-) False AMCG00019417
TU42915 lncRNA upstream 838422 21437915 ~ 21438156 (-) True G34277
TU42921 lncRNA upstream 946715 21546208 ~ 21546524 (-) True G34283
TU43098 lncRNA upstream 2108452 22707945 ~ 22719120 (-) False AMCG00019487
TU43099 lncRNA upstream 2108452 22707945 ~ 22744182 (-) True AMCG00019487
TU43145 lncRNA upstream 2519308 23118801 ~ 23120960 (-) True G34468
AMCG00019442 mRNA downstream 20154 20564046 ~ 20574616 (-) True AMCG00019442
AMCG00019439 mRNA downstream 187178 20377818 ~ 20407592 (-) True AMCG00019439
AMCG00019434 mRNA downstream 241676 20352154 ~ 20353094 (-) True AMCG00019434
AMCG00019436 mRNA downstream 316419 20207817 ~ 20278351 (-) True AMCG00019436
AMCG00019435 mRNA downstream 397636 20193251 ~ 20197134 (-) True AMCG00019435
AMCG00019449 mRNA upstream 83769 20683262 ~ 20703828 (-) True AMCG00019449
AMCG00019447 mRNA upstream 128547 20728040 ~ 20730981 (-) True AMCG00019447
AMCG00019446 mRNA upstream 147214 20746707 ~ 20765486 (-) False AMCG00019446
AMCG00019448 mRNA upstream 172037 20771530 ~ 20776598 (-) True AMCG00019448
AMCG00019452 mRNA upstream 221223 20820716 ~ 20823757 (-) True AMCG00019452
TU42573 other downstream 1146197 19442395 ~ 19448573 (-) True AMCG00019419
TU41832 other downstream 4873318 15692482 ~ 15721452 (-) True G33381
TU41680 other downstream 5602774 14951842 ~ 14991996 (-) True G33259
TU41560 other downstream 6036480 14491891 ~ 14558290 (-) False G33163
TU41559 other downstream 6102552 14491891 ~ 14492218 (-) True G33163
TU42823 other upstream 144037 20743530 ~ 20765496 (-) True AMCG00019446
TU43148 other upstream 2548368 23147861 ~ 23199608 (-) True G34470
TU43838 other upstream 8918503 29517996 ~ 29521984 (-) True G35067
TU43847 other upstream 8945738 29545231 ~ 29550162 (-) False AMCG00019556
TU43875 other upstream 9039073 29638566 ~ 29645963 (-) False AMCG00019554

Expression Profile