RNA id: AMCG00019452


Basic Information

Item Value
RNA id AMCG00019452
length 573
RNA type mRNA
GC content 0.53
exon number 2
gene id AMCG00019452
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 20820716 ~ 20823757 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAAGCGAAAGCAGCAACCGCAGAACAACAGCAGCATCGCAGTGAAGCTGAGCAAGGAAGAGAAAGTCCCCTCAGCCAGCAACTTGGCAGCCAGCGGCAAGTCAGCATCTCGGACCTCGGTGAAACAGGAAGTGCCCCCCCCTAAGCCCATCAAGAAACCAGAGCCAGCACACAATCCCACCAGCTCTGGGAACGGACAGCTTCACTCCCAGTATCACGGGTATTATGTGAAAGCCGAGGTGCAGATCCCGCCCGAAGAGCCCGAGGACACTGACTACAACATCTCCAATTTGGCCCTCGCCAGGATGCCGCCCCCTCCAAAGCAGAGCCGAGTGGCCCTTGCAAAAGCCGTAAAGGGAAAGCCAGCTGCCAAAGAAAGTAAAACCGAGCCAAAAGTGAAGAGACACGAGTCTATAAAACCAAAGAGCCTAGCAGAAACCAAGAAAGCCAGCCTCCAAGAGGACACCAGCGAAGGCACAGAGAATGAATCGGGTCCTAACTCAATTCTGGTTGCCCTTGTAATGCTGTTGAATATTGGTCTAGCAATTCTTTTCGTCCATTTCCTGACTTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU42753 lncRNA downstream 271016 20478257 ~ 20549700 (-) True G34148
TU42577 lncRNA downstream 1339748 19467076 ~ 19480968 (-) True G34006
TU42512 lncRNA downstream 1519169 19294812 ~ 19301547 (-) False AMCG00019417
TU42915 lncRNA upstream 614158 21437915 ~ 21438156 (-) True G34277
TU42921 lncRNA upstream 722451 21546208 ~ 21546524 (-) True G34283
TU43098 lncRNA upstream 1884188 22707945 ~ 22719120 (-) False AMCG00019487
TU43099 lncRNA upstream 1884188 22707945 ~ 22744182 (-) True AMCG00019487
TU43145 lncRNA upstream 2295044 23118801 ~ 23120960 (-) True G34468
AMCG00019448 mRNA downstream 44118 20771530 ~ 20776598 (-) True AMCG00019448
AMCG00019446 mRNA downstream 55230 20746707 ~ 20765486 (-) False AMCG00019446
AMCG00019447 mRNA downstream 89735 20728040 ~ 20730981 (-) True AMCG00019447
AMCG00019449 mRNA downstream 116888 20683262 ~ 20703828 (-) True AMCG00019449
AMCG00019443 mRNA downstream 221223 20594770 ~ 20599493 (-) True AMCG00019443
AMCG00019451 mRNA upstream 38375 20862132 ~ 20869165 (-) True AMCG00019451
AMCG00019456 mRNA upstream 411011 21234768 ~ 21242674 (-) True AMCG00019456
AMCG00019457 mRNA upstream 423031 21246788 ~ 21293737 (-) True AMCG00019457
AMCG00019458 mRNA upstream 583704 21407461 ~ 21408830 (-) True AMCG00019458
AMCG00019462 mRNA upstream 834508 21658265 ~ 21658930 (-) True AMCG00019462
TU42823 other downstream 55220 20743530 ~ 20765496 (-) True AMCG00019446
TU42573 other downstream 1372143 19442395 ~ 19448573 (-) True AMCG00019419
TU41832 other downstream 5099264 15692482 ~ 15721452 (-) True G33381
TU41680 other downstream 5828720 14951842 ~ 14991996 (-) True G33259
TU41560 other downstream 6262426 14491891 ~ 14558290 (-) False G33163
TU43148 other upstream 2324104 23147861 ~ 23199608 (-) True G34470
TU43838 other upstream 8694239 29517996 ~ 29521984 (-) True G35067
TU43847 other upstream 8721474 29545231 ~ 29550162 (-) False AMCG00019556
TU43875 other upstream 8814809 29638566 ~ 29645963 (-) False AMCG00019554
TU43881 other upstream 8855472 29679229 ~ 29685302 (-) True G35101

Expression Profile